STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB66153.1Hypothetical protein. (392 aa)    
Predicted Functional Partners:
AKB65223.1
Hypothetical protein.
  
     0.721
AKB66220.1
Hypothetical protein.
 
     0.715
AKB65225.1
Hypothetical protein.
  
     0.708
AKB66237.1
Hypothetical protein.
  
     0.703
AKB63354.1
Hypothetical protein.
  
     0.669
AKB64637.1
Hypothetical protein.
  
     0.665
AKB66020.1
Hypothetical protein.
  
     0.656
rad50
DNA double-strand break repair Rad50 ATPase; Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. The complex may facilitate opening of the processed DNA ends to aid in the recruitment of HerA and NurA. Rad50 controls the balance between DNA end bridging and DNA resection via ATP-dependent structural rearrangements of the Rad50/Mre11 complex; Belongs to the SMC family. RAD50 subfamily.
 
     0.654
AKB65876.1
PQQ enzyme repeat domain protein.
 
     0.635
AKB65877.1
PQQ enzyme repeat domain protein.
  
     0.634
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.