Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AKB66178.1Choline permease LicB. (348 aa)    
Predicted Functional Partners:
AKB66177.1
Hypothetical protein.
       0.803
AKB65832.1
Trimethylamine:corrinoid methyltransferase; Pyrrolysine-containing; Belongs to the trimethylamine methyltransferase family.
 
     0.745
pylS
Pyrrolysyl-tRNA synthetase; Catalyzes the attachment of pyrrolysine to tRNA(Pyl). Pyrrolysine is a lysine derivative encoded by the termination codon UAG.
  
   
 0.698
AKB63921.1
Hypothetical protein.
  
     0.675
AKB66418.1
Proline reductase for pyrrolysine biosynthesis.
  
     0.664
AKB63922.1
Hypothetical protein.
  
     0.658
AKB65901.1
Hypothetical protein.
  
     0.655
AKB66417.1
Pyrrolysine synthetase.
 
   
 0.655
AKB66219.1
Methanol:corrinoid methyltransferase.
 
   
 0.642
AKB64542.1
Monomethylamine:corrinoid methyltransferase; Pyrrolysine-containing.
 
     0.640
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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