Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB66233.1ABC transporter, permease protein. (403 aa)    
Predicted Functional Partners:
AKB63547.1
ABC transporter, ATP-binding protein.
 0.971
AKB63550.1
ABC transporter, ATP-binding protein.
 0.964
AKB65018.1
Cell division transporter, ATP-binding protein FtsE; TCDB 3.A.5.1.1.
 0.960
AKB66257.1
ABC transporter, ATP-binding protein.
 0.959
lolD
Lipoprotein releasing system ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner.
 0.957
AKB64784.1
ABC transporter, ATP-binding protein.
 0.950
AKB65234.1
ABC transporter, ATP-binding protein.
 0.950
AKB64856.1
ABC transporter, ATP-binding protein.
 0.945
AKB65936.1
Glutamate transport ATP-binding protein.
   
  0.640
msrB
Peptide methionine sulfoxide reductase MsrB.
     
 0.490
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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