STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB66241.1Biotin synthase-related enzyme. (331 aa)    
Predicted Functional Partners:
AKB63861.1
Hypothetical protein.
 
     0.765
AKB65134.1
OB-fold nucleic acid binding domain protein.
 
     0.674
AKB66495.1
Putative transcriptional regulator with an HTH domain protein.
  
     0.595
AKB66121.1
Hypothetical protein.
  
     0.574
AKB64390.1
Hypothetical protein.
  
     0.565
AKB63675.1
Hypothetical protein.
  
     0.544
AKB65534.1
Chorismate mutase I.
  
     0.531
AKB63804.1
Hypothetical protein.
  
     0.524
AKB64580.1
PUA-PAPS reductase like fusion.
 
     0.523
AKB65913.1
Hypothetical protein.
  
   
 0.518
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.