STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB66248.1Hypothetical protein; Belongs to the LarC family. (396 aa)    
Predicted Functional Partners:
AKB66343.1
ATP-utilizing enzyme of the PP-loop superfamily.
 
 0.963
AKB66249.1
Circadian phase modifier.
 
  
 0.961
AKB65594.1
Transcriptional regulator.
 
  
 0.710
AKB65593.1
Transcriptional regulator.
 
  
 0.707
AKB65339.1
Ferredoxin.
 
    0.515
AKB63607.1
Substrate-specific component NikM of nickel ECF transporter.
 
    0.479
AKB63894.1
Iron-sulfur cluster-binding protein.
 
     0.437
AKB66086.1
Iron-sulfur cluster-binding protein.
 
     0.428
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.