AKB66257.1 protein (Methanosarcina mazei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AKB66257.1

ABC transporter, ATP-binding protein. (236 aa)

Predicted Functional Partners:

AKB66256.1

0.970

AKB63553.1

0.960

AKB64864.1

0.960

AKB66233.1

0.959

AKB64782.1

0.958

AKB63549.1

0.947

AKB65020.1

0.932

AKB66255.1

0.651

AKB65235.1

0.630

AKB65332.1

0.568

Your Current Organism:

Methanosarcina mazei

NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKB63549.1	AKB66257.1	MSMAS_0353	MSMAS_3061	ABC transporter, permease protein.	ABC transporter, ATP-binding protein.	0.947
AKB63553.1	AKB66257.1	MSMAS_0357	MSMAS_3061	ABC transporter, permease protein.	ABC transporter, ATP-binding protein.	0.960
AKB64782.1	AKB66257.1	MSMAS_1586	MSMAS_3061	Cell division protein FtsX.	ABC transporter, ATP-binding protein.	0.958
AKB64864.1	AKB66257.1	MSMAS_1668	MSMAS_3061	ABC transporter, permease protein.	ABC transporter, ATP-binding protein.	0.960
AKB65020.1	AKB66257.1	MSMAS_1824	MSMAS_3061	ABC transporter, permease protein.	ABC transporter, ATP-binding protein.	0.932
AKB65235.1	AKB66257.1	MSMAS_2039	MSMAS_3061	ABC transporter, permease protein.	ABC transporter, ATP-binding protein.	0.630
AKB65332.1	AKB66257.1	MSMAS_2136	MSMAS_3061	ABC transporter, ATP-binding protein.	ABC transporter, ATP-binding protein.	0.568
AKB66233.1	AKB66257.1	MSMAS_3037	MSMAS_3061	ABC transporter, permease protein.	ABC transporter, ATP-binding protein.	0.959
AKB66255.1	AKB66256.1	MSMAS_3059	MSMAS_3060	Hypothetical protein.	ABC transporter, permease protein.	0.663
AKB66255.1	AKB66257.1	MSMAS_3059	MSMAS_3061	Hypothetical protein.	ABC transporter, ATP-binding protein.	0.651
AKB66256.1	AKB66255.1	MSMAS_3060	MSMAS_3059	ABC transporter, permease protein.	Hypothetical protein.	0.663
AKB66256.1	AKB66257.1	MSMAS_3060	MSMAS_3061	ABC transporter, permease protein.	ABC transporter, ATP-binding protein.	0.970
AKB66257.1	AKB63549.1	MSMAS_3061	MSMAS_0353	ABC transporter, ATP-binding protein.	ABC transporter, permease protein.	0.947
AKB66257.1	AKB63553.1	MSMAS_3061	MSMAS_0357	ABC transporter, ATP-binding protein.	ABC transporter, permease protein.	0.960
AKB66257.1	AKB64782.1	MSMAS_3061	MSMAS_1586	ABC transporter, ATP-binding protein.	Cell division protein FtsX.	0.958
AKB66257.1	AKB64864.1	MSMAS_3061	MSMAS_1668	ABC transporter, ATP-binding protein.	ABC transporter, permease protein.	0.960
AKB66257.1	AKB65020.1	MSMAS_3061	MSMAS_1824	ABC transporter, ATP-binding protein.	ABC transporter, permease protein.	0.932
AKB66257.1	AKB65235.1	MSMAS_3061	MSMAS_2039	ABC transporter, ATP-binding protein.	ABC transporter, permease protein.	0.630
AKB66257.1	AKB65332.1	MSMAS_3061	MSMAS_2136	ABC transporter, ATP-binding protein.	ABC transporter, ATP-binding protein.	0.568
AKB66257.1	AKB66233.1	MSMAS_3061	MSMAS_3037	ABC transporter, ATP-binding protein.	ABC transporter, permease protein.	0.959