STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB66287.1Tungstate ABC transporter, ATP-binding protein WtpC. (353 aa)    
Predicted Functional Partners:
AKB66286.1
Tungstate ABC transporter, permease protein WtpB.
 0.998
AKB63786.1
Molybdenum transport system permease protein ModB; TCDB 3.A.1.8.1.
 
 
  0.968
AKB66285.1
Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA; TCDB 3.A.1.8.1.
 
  
  0.968
AKB63787.1
Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA; TCDB 3.A.1.8.1.
 
  
  0.921
AKB63784.1
ABC transporter.
 
 
 
0.919
AKB66289.1
Molybdenum ABC transporter ATP-binding protein.
 
    0.632
AKB64555.1
Oligopeptide transport system permease protein OppB; TCDB 3.A.1.5.1.
 
    
0.616
AKB66288.1
Molybdenum transport system protein ModD; Involved in the catabolism of quinolinic acid (QA). Belongs to the NadC/ModD family.
      0.545
AKB64515.1
Dipeptide transport ATP-binding protein DppD; TCDB 3.A.1.5.2.
 
    
0.442
rpl2
LSU ribosomal protein L8e (L2p); One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
 
     0.442
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.