STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB66310.1Transcriptional regulator, TrmB family. (259 aa)    
Predicted Functional Partners:
AKB66309.1
Putative metal dependent hydrolase.
 
     0.622
rnp4
Ribonuclease P protein component 4; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.
 
     0.596
AKB66312.1
Hypothetical protein.
 
     0.586
AKB66313.1
Hypothetical protein.
 
     0.562
AKB64394.1
Sulfopyruvate decarboxylase - beta subunit.
  
    0.549
AKB63274.1
Mrr restriction system protein.
   
    0.532
AKB66311.1
Transporter, RND superfamily.
       0.518
AKB64552.1
Iron-sulfur cluster binding protein.
   
    0.462
AKB66078.1
Hypothetical protein.
  
     0.452
AKB64215.1
Hypothetical protein.
  
     0.421
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.