STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB66341.1(dimethylallyl)adenosine tRNA methylthiotransferase. (374 aa)    
Predicted Functional Partners:
AKB65375.1
Hypothetical protein.
 
  
 0.811
AKB66340.1
Zinc metalloprotease.
       0.641
AKB64814.1
Hypothetical protein.
  
    0.499
AKB64953.1
Hypothetical protein.
  
    0.499
AKB63987.1
Nitrogenase-related protein.
 
 
 0.489
AKB66339.1
Aconitate hydratase X, predicted; Belongs to the UPF0107 family.
       0.464
AKB66338.1
Hypothetical protein.
       0.463
AKB65703.1
(dimethylallyl)adenosine tRNA methylthiotransferase.
 
  
 0.461
mtrB
N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit B; Part of a complex that catalyzes the formation of methyl- coenzyme M and tetrahydromethanopterin from coenzyme M and methyl- tetrahydromethanopterin. This is an energy-conserving, sodium-ion translocating step.
 
     0.427
AKB63264.1
Methyl coenzyme M reductase associated protein / Fe-S oxidoreductase, related to NifB/MoaA family.
 
     0.422
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.