STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB66341.1(dimethylallyl)adenosine tRNA methylthiotransferase. (374 aa)    
Predicted Functional Partners:
AKB66340.1
Zinc metalloprotease.
       0.819
AKB65375.1
Hypothetical protein.
 
  
 0.804
AKB66338.1
Hypothetical protein.
       0.801
AKB66339.1
Aconitate hydratase X, predicted; Belongs to the UPF0107 family.
       0.801
AKB66337.1
3-octaprenyl-4-hydroxybenzoate decarboxylase.
       0.687
gltX
Glutamyl-tRNA synthetase / Glutamyl-tRNA(Gln) synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).
 
   
 0.542
AKB63987.1
Nitrogenase-related protein.
 
 
 0.491
AKB65405.1
Putative oxidoreductase.
 
  
 0.475
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome.
       0.470
AKB66052.1
Archaeal histone.
 
     0.470
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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