Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB66349.1Integral membrane protein. (662 aa)    
Predicted Functional Partners:
AKB66348.1
Type II secretion system protein.
 
  
 0.954
AKB63564.1
Flagella-related protein FlaI.
 
  
 0.810
AKB66350.1
Hypothetical protein.
       0.765
AKB64051.1
Hypothetical protein.
  
    0.746
AKB65913.1
Hypothetical protein.
  
    0.732
AKB66190.1
Signal peptidase, type IV - prepilin/preflagellin.
 
   
 0.724
AKB66370.1
Putative transcriptional regulators.
 
     0.704
AKB63858.1
Oligosaccharyl transferase.
 
   
 0.702
AKB64179.1
Flagella-related protein FlaI.
 
  
 0.702
AKB65598.1
Flagella-related protein FlaI.
 
  
 0.700
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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