STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB66370.1Putative transcriptional regulators. (318 aa)    
Predicted Functional Partners:
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family.
 
   
 0.837
AKB66349.1
Integral membrane protein.
 
     0.704
AKB66069.1
Hypothetical protein.
  
     0.684
AKB66292.1
Hypothetical protein.
  
     0.676
AKB63628.1
RecB family exonuclease.
 
   
 0.672
AKB65679.1
Hypothetical protein.
  
     0.666
AKB65706.1
KEOPS complex Cgi121-like subunit.
 
     0.654
AKB63859.1
Oligosaccharyl transferase.
  
     0.651
AKB63858.1
Oligosaccharyl transferase.
  
     0.649
AKB65837.1
Archaeosine tRNA-ribosyltransferase type 2 short.
  
     0.649
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.