STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB66391.1Putative nucleotidyltransferase. (134 aa)    
Predicted Functional Partners:
AKB66390.1
Hypothetical protein.
 
 
 
 0.964
AKB63338.1
Hypothetical protein.
 
 
 
 0.844
AKB65424.1
Hypothetical protein.
 
 
 
 0.802
AKB64758.1
Hypothetical protein.
 
     0.502
trpS
Tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp).
       0.489
AKB63349.1
CAAX amino terminal protease family protein.
 
     0.470
AKB66222.1
Hypothetical protein.
 
     0.456
AKB63319.1
CAAX amino terminal protease family protein.
 
     0.408
AKB66376.1
Acetyltransferase (GNAT) family protein.
  
     0.407
AKB65762.1
Hypothetical protein.
 
     0.405
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.