Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
secFProtein-export membrane protein SecF; Involved in protein export. (301 aa)    
Predicted Functional Partners:
secD
Protein-export membrane protein SecD; Involved in protein export.
 
 0.999
AKB66433.1
Replication factor C small subunit.
  
  
 0.909
AKB65902.1
Histone acetyltransferase, ELP3 family.
       0.776
AKB66436.1
dCMP deaminase.
       0.591
AKB66515.1
Signal peptidase I.
  
  
 0.583
atpC
V-type ATP synthase subunit C; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
     0.528
atpF
V-type ATP synthase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
     0.524
AKB63697.1
Hypothetical protein.
  
     0.510
atpE
V-type ATP synthase subunit E; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
     0.510
AKB65618.1
DNA-directed RNA polymerase subunit B''; Belongs to the RNA polymerase beta chain family.
  
  
 0.510
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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