STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB66495.1Putative transcriptional regulator with an HTH domain protein. (173 aa)    
Predicted Functional Partners:
AKB65051.1
Putative methanogenesis marker protein 8.
  
    0.687
AKB64243.1
N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit X.
  
   
 0.686
AKB65055.1
Putative methanogenesis marker protein 8.
  
    0.678
AKB63587.1
Putative methanogenesis marker protein 5.
  
     0.657
AKB63584.1
Putative methanogenesis marker protein 7.
  
     0.640
trmY
Protein of unknown function DUF358; Specifically catalyzes the N1-methylation of pseudouridine at position 54 (Psi54) in tRNAs; Belongs to the methyltransferase superfamily. TrmY family.
  
     0.634
AKB63987.1
Nitrogenase-related protein.
  
     0.632
AKB65134.1
OB-fold nucleic acid binding domain protein.
  
     0.632
AKB63265.1
Methyl coenzyme M reductase beta subunit.
 
     0.631
AKB63588.1
Putative methanogenesis marker protein 6.
  
     0.627
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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