STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB66496.1ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic component. (329 aa)    
Predicted Functional Partners:
AKB66497.1
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
 
 0.995
AKB66498.1
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.
 
 
 0.993
AKB64580.1
PUA-PAPS reductase like fusion.
  
  
 0.771
mer
5,10-methylenetetrahydromethanopterin reductase; Catalyzes the reversible reduction of methylene-H(4)MPT to methyl-H(4)MPT; Belongs to the mer family.
  
 
 0.658
AKB65098.1
5,10-methylenetetrahydromethanopterin reductase.
  
 
 0.658
AKB65687.1
5,10-methylenetetrahydromethanopterin reductase.
  
 
 0.658
AKB66524.1
Zinc ABC transporter, ATP-binding protein ZnuC.
  
 
 0.596
AKB65938.1
Glutamine ABC transporter, periplasmic glutamine-binding protein; TCDB 3.A.1.3.2.
 
  
 0.511
AKB66495.1
Putative transcriptional regulator with an HTH domain protein.
 
     0.504
AKB66135.1
Siroheme synthase; Precorrin-2 oxidase; Sirohydrochlorin ferrochelatase.
 
  
 0.497
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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