STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB66497.1ABC-type nitrate/sulfonate/bicarbonate transport system, permease component. (262 aa)    
Predicted Functional Partners:
AKB66496.1
ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic component.
 
 0.999
AKB66498.1
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.
 
 0.999
AKB66495.1
Putative transcriptional regulator with an HTH domain protein.
 
     0.680
AKB64580.1
PUA-PAPS reductase like fusion.
  
  
 0.665
mer
5,10-methylenetetrahydromethanopterin reductase; Catalyzes the reversible reduction of methylene-H(4)MPT to methyl-H(4)MPT; Belongs to the mer family.
 
  
 0.531
AKB64841.1
Coenzyme F420 hydrogenase subunit alpha.
     
 0.474
AKB65098.1
5,10-methylenetetrahydromethanopterin reductase.
  
  
 0.461
AKB65687.1
5,10-methylenetetrahydromethanopterin reductase.
  
  
 0.461
AKB64199.1
L-proline glycine betaine ABC transport system permease protein ProV; TCDB 3.A.1.12.1.
 
   
 0.458
AKB63543.1
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
   
 
 0.447
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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