Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKB66524.1Zinc ABC transporter, ATP-binding protein ZnuC. (254 aa)    
Predicted Functional Partners:
AKB66523.1
Zinc ABC transporter, inner membrane permease protein ZnuB.
 
 0.999
AKB66525.1
Zinc ABC transporter, periplasmic-binding protein ZnuA.
 
 
 0.999
AKB66526.1
Putative zinc-dependent repressor ZntR, DtxR superfamily.
  
 
 0.853
AKB63461.1
Iron-dependent repressor IdeR/DtxR.
  
 
 0.598
AKB65329.1
Iron-dependent repressor IdeR/DtxR.
  
 
 0.589
AKB66382.1
Hypothetical protein.
  
 
 0.589
AKB66268.1
Putative transporter PduT for various metalloporphyrins.
  
  
 0.527
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
       0.520
AKB66496.1
ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic component.
  
 
 0.486
AKB65864.1
Serine/threonine-protein kinase RIO1.
       0.472
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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