STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB66525.1Zinc ABC transporter, periplasmic-binding protein ZnuA. (328 aa)    
Predicted Functional Partners:
AKB66523.1
Zinc ABC transporter, inner membrane permease protein ZnuB.
 
 0.999
AKB66524.1
Zinc ABC transporter, ATP-binding protein ZnuC.
 
 
 0.999
AKB66526.1
Putative zinc-dependent repressor ZntR, DtxR superfamily.
  
 
 0.807
AKB65815.1
Iron(III) dicitrate transport ATP-binding protein.
 
 
 0.785
rps14
SSU ribosomal protein S29e (S14p); Binds 16S rRNA, required for the assembly of 30S particles.
  
  
 0.690
AKB66382.1
Hypothetical protein.
 
 
 0.682
gap
NAD(P)-dependent glyceraldehyde 3-phosphate dehydrogenase archaeal.
    
 0.680
AKB63425.1
Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family.
  
  
 0.661
AKB66244.1
Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family.
  
  
 0.661
AKB63461.1
Iron-dependent repressor IdeR/DtxR.
  
 
 0.643
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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