STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE27781.1Tetratricopeptide repeat-containing protein. (685 aa)    
Predicted Functional Partners:
SHE27791.1
Outer membrane receptor proteins, mostly Fe transport.
 
     0.894
SHF08444.1
Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor.
    
  0.603
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.588
SHE27771.1
Hypothetical protein.
       0.530
SHF18740.1
TonB dependent receptor.
  
    0.525
SHE27761.1
Hypothetical protein.
       0.514
SHF38144.1
TonB dependent receptor.
  
     0.504
SHE57174.1
Carboxypeptidase regulatory-like domain-containing protein.
  
     0.451
SHE32307.1
Zn-dependent amino-or carboxypeptidase, M28 family.
  
     0.448
SHE45126.1
Iron complex outermembrane recepter protein.
  
     0.448
Your Current Organism:
Thermomonas hydrothermalis
NCBI taxonomy Id: 213588
Other names: ATCC BAA-470, DSM 14834, T. hydrothermalis, Thermomonas hydrothermalis Alves et al. 2003, strain SGM-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.