Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHE39603.1 | SHE84560.1 | SAMN02745204_00353 | SAMN02745204_01253 | EF hand. | ATP-dependent RNA helicase SUPV3L1/SUV3. | 0.679 |
SHE39603.1 | apaH | SAMN02745204_00353 | SAMN02745204_01325 | EF hand. | Bis(5'nucleosyl)-tetraphosphatase, ApaH; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family. | 0.974 |
SHE39603.1 | dnaK | SAMN02745204_00353 | SAMN02745204_01563 | EF hand. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.480 |
SHE46380.1 | SHE84560.1 | SAMN02745204_00501 | SAMN02745204_01253 | EF hand. | ATP-dependent RNA helicase SUPV3L1/SUV3. | 0.679 |
SHE46380.1 | SHE93436.1 | SAMN02745204_00501 | SAMN02745204_01445 | EF hand. | EF hand. | 0.642 |
SHE46380.1 | apaH | SAMN02745204_00501 | SAMN02745204_01325 | EF hand. | Bis(5'nucleosyl)-tetraphosphatase, ApaH; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family. | 0.974 |
SHE46380.1 | dnaK | SAMN02745204_00501 | SAMN02745204_01563 | EF hand. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.480 |
SHE84522.1 | SHE84560.1 | SAMN02745204_01252 | SAMN02745204_01253 | acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | ATP-dependent RNA helicase SUPV3L1/SUV3. | 0.450 |
SHE84560.1 | SHE39603.1 | SAMN02745204_01253 | SAMN02745204_00353 | ATP-dependent RNA helicase SUPV3L1/SUV3. | EF hand. | 0.679 |
SHE84560.1 | SHE46380.1 | SAMN02745204_01253 | SAMN02745204_00501 | ATP-dependent RNA helicase SUPV3L1/SUV3. | EF hand. | 0.679 |
SHE84560.1 | SHE84522.1 | SAMN02745204_01253 | SAMN02745204_01252 | ATP-dependent RNA helicase SUPV3L1/SUV3. | acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.450 |
SHE84560.1 | SHE93436.1 | SAMN02745204_01253 | SAMN02745204_01445 | ATP-dependent RNA helicase SUPV3L1/SUV3. | EF hand. | 0.679 |
SHE84560.1 | SHF02618.1 | SAMN02745204_01253 | SAMN02745204_01639 | ATP-dependent RNA helicase SUPV3L1/SUV3. | Aspartate kinase; In the C-terminal section; belongs to the homoserine dehydrogenase family. | 0.472 |
SHE84560.1 | apaH | SAMN02745204_01253 | SAMN02745204_01325 | ATP-dependent RNA helicase SUPV3L1/SUV3. | Bis(5'nucleosyl)-tetraphosphatase, ApaH; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family. | 0.874 |
SHE84560.1 | dinB | SAMN02745204_01253 | SAMN02745204_02140 | ATP-dependent RNA helicase SUPV3L1/SUV3. | DNA polymerase-4; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.701 |
SHE84560.1 | dnaK | SAMN02745204_01253 | SAMN02745204_01563 | ATP-dependent RNA helicase SUPV3L1/SUV3. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.797 |
SHE84560.1 | infA | SAMN02745204_01253 | SAMN02745204_00921 | ATP-dependent RNA helicase SUPV3L1/SUV3. | Bacterial translation initiation factor 1 (bIF-1); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.587 |
SHE84560.1 | tgt | SAMN02745204_01253 | SAMN02745204_00664 | ATP-dependent RNA helicase SUPV3L1/SUV3. | Queuine tRNA-ribosyltransferase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form t [...] | 0.690 |
SHE93436.1 | SHE46380.1 | SAMN02745204_01445 | SAMN02745204_00501 | EF hand. | EF hand. | 0.642 |
SHE93436.1 | SHE84560.1 | SAMN02745204_01445 | SAMN02745204_01253 | EF hand. | ATP-dependent RNA helicase SUPV3L1/SUV3. | 0.679 |
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