Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KIH78587.1 | KIH78589.1 | SMSRO_v1c19880 | SMSRO_v1c19900 | Hypothetical protein. | Putative DNA-binding protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | 0.725 |
KIH78587.1 | KIH78592.1 | SMSRO_v1c19880 | SMSRO_v1c19930 | Hypothetical protein. | Hypothetical protein. | 0.443 |
KIH78587.1 | adhA | SMSRO_v1c19880 | SMSRO_v1c19920 | Hypothetical protein. | Alcohol dehydrogenase. | 0.640 |
KIH78587.1 | ftsY | SMSRO_v1c19880 | SMSRO_v1c19910 | Hypothetical protein. | Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.729 |
KIH78587.1 | metK | SMSRO_v1c19880 | SMSRO_v1c19870 | Hypothetical protein. | S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.426 |
KIH78587.1 | ymdB | SMSRO_v1c19880 | SMSRO_v1c19890 | Hypothetical protein. | Putative metallophosphatase. | 0.740 |
KIH78589.1 | KIH78587.1 | SMSRO_v1c19900 | SMSRO_v1c19880 | Putative DNA-binding protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Hypothetical protein. | 0.725 |
KIH78589.1 | KIH78592.1 | SMSRO_v1c19900 | SMSRO_v1c19930 | Putative DNA-binding protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Hypothetical protein. | 0.471 |
KIH78589.1 | adhA | SMSRO_v1c19900 | SMSRO_v1c19920 | Putative DNA-binding protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Alcohol dehydrogenase. | 0.686 |
KIH78589.1 | ftsY | SMSRO_v1c19900 | SMSRO_v1c19910 | Putative DNA-binding protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.829 |
KIH78589.1 | metK | SMSRO_v1c19900 | SMSRO_v1c19870 | Putative DNA-binding protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.437 |
KIH78589.1 | ymdB | SMSRO_v1c19900 | SMSRO_v1c19890 | Putative DNA-binding protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Putative metallophosphatase. | 0.791 |
KIH78592.1 | KIH78587.1 | SMSRO_v1c19930 | SMSRO_v1c19880 | Hypothetical protein. | Hypothetical protein. | 0.443 |
KIH78592.1 | KIH78589.1 | SMSRO_v1c19930 | SMSRO_v1c19900 | Hypothetical protein. | Putative DNA-binding protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | 0.471 |
KIH78592.1 | adhA | SMSRO_v1c19930 | SMSRO_v1c19920 | Hypothetical protein. | Alcohol dehydrogenase. | 0.524 |
KIH78592.1 | ftsY | SMSRO_v1c19930 | SMSRO_v1c19910 | Hypothetical protein. | Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.471 |
KIH78592.1 | ymdB | SMSRO_v1c19930 | SMSRO_v1c19890 | Hypothetical protein. | Putative metallophosphatase. | 0.462 |
adhA | KIH78587.1 | SMSRO_v1c19920 | SMSRO_v1c19880 | Alcohol dehydrogenase. | Hypothetical protein. | 0.640 |
adhA | KIH78589.1 | SMSRO_v1c19920 | SMSRO_v1c19900 | Alcohol dehydrogenase. | Putative DNA-binding protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | 0.686 |
adhA | KIH78592.1 | SMSRO_v1c19920 | SMSRO_v1c19930 | Alcohol dehydrogenase. | Hypothetical protein. | 0.524 |
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