Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KIH79529.1 | polA | SMSRO_v1c05330 | SMSRO_v1c21290 | Hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.924 |
KIH79529.1 | topA | SMSRO_v1c05330 | SMSRO_v1c04400 | Hypothetical protein. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.739 |
KIH79771.1 | KIH79772.1 | SMSRO_v1c07820 | SMSRO_v1c07830 | Hypothetical protein. | DEAD/DEAH family helicase. | 0.916 |
KIH79771.1 | KIH79778.1 | SMSRO_v1c07820 | SMSRO_v1c07890 | Hypothetical protein. | Hypothetical protein. | 0.736 |
KIH79771.1 | KIH79780.1 | SMSRO_v1c07820 | SMSRO_v1c07910 | Hypothetical protein. | Hypothetical protein. | 0.736 |
KIH79771.1 | dinB | SMSRO_v1c07820 | SMSRO_v1c11320 | Hypothetical protein. | DNA polymerase IV. | 0.490 |
KIH79771.1 | dnaN | SMSRO_v1c07820 | SMSRO_v1c00020 | Hypothetical protein. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.670 |
KIH79771.1 | polA | SMSRO_v1c07820 | SMSRO_v1c21290 | Hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.973 |
KIH79771.1 | snf | SMSRO_v1c07820 | SMSRO_v1c07900 | Hypothetical protein. | SWF/SNF family helicase. | 0.755 |
KIH79772.1 | KIH79771.1 | SMSRO_v1c07830 | SMSRO_v1c07820 | DEAD/DEAH family helicase. | Hypothetical protein. | 0.916 |
KIH79772.1 | KIH79778.1 | SMSRO_v1c07830 | SMSRO_v1c07890 | DEAD/DEAH family helicase. | Hypothetical protein. | 0.736 |
KIH79772.1 | KIH79780.1 | SMSRO_v1c07830 | SMSRO_v1c07910 | DEAD/DEAH family helicase. | Hypothetical protein. | 0.736 |
KIH79772.1 | dinB | SMSRO_v1c07830 | SMSRO_v1c11320 | DEAD/DEAH family helicase. | DNA polymerase IV. | 0.490 |
KIH79772.1 | dnaN | SMSRO_v1c07830 | SMSRO_v1c00020 | DEAD/DEAH family helicase. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.670 |
KIH79772.1 | polA | SMSRO_v1c07830 | SMSRO_v1c21290 | DEAD/DEAH family helicase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.973 |
KIH79772.1 | snf | SMSRO_v1c07830 | SMSRO_v1c07900 | DEAD/DEAH family helicase. | SWF/SNF family helicase. | 0.755 |
KIH79778.1 | KIH79771.1 | SMSRO_v1c07890 | SMSRO_v1c07820 | Hypothetical protein. | Hypothetical protein. | 0.736 |
KIH79778.1 | KIH79772.1 | SMSRO_v1c07890 | SMSRO_v1c07830 | Hypothetical protein. | DEAD/DEAH family helicase. | 0.736 |
KIH79778.1 | KIH79780.1 | SMSRO_v1c07890 | SMSRO_v1c07910 | Hypothetical protein. | Hypothetical protein. | 0.808 |
KIH79778.1 | dinB | SMSRO_v1c07890 | SMSRO_v1c11320 | Hypothetical protein. | DNA polymerase IV. | 0.846 |
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