Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RUM_02420NAD(P)H-nitrite reductase. (410 aa)    
Predicted Functional Partners:
RUM_14070
Uncharacterized flavoproteins.
 
 
 0.995
RUM_02430
Fe-S-cluster-containing hydrogenase components 2.
 
 
 
 0.989
RUM_02410
Glutamate synthase (NADPH) GltB3 subunit.
 
  
 0.950
RUM_02450
Glutamate synthase (NADPH) GltB1 subunit.
 
  
 0.934
RUM_02440
Glutamate synthase (NADPH) GltB2 subunit; Belongs to the glutamate synthase family.
 
  
 0.924
hcp
Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
  
  
 0.671
RUM_02480
Ammonium transporter; Belongs to the P(II) protein family.
  
  
 0.671
RUM_00890
Acetaldehyde dehydrogenase /alcohol dehydrogenase AdhE; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.582
RUM_02390
Response regulator with putative antiterminator output domain.
 
  
 0.568
RUM_16100
Hydrogenases, Fe-only.
  
  
 0.562
Your Current Organism:
Ruminococcus champanellensis
NCBI taxonomy Id: 213810
Other names: R. champanellensis 18P13 = JCM 17042, Ruminococcus champanellensis 18P13, Ruminococcus champanellensis 18P13 = JCM 17042, Ruminococcus champanellensis DSM 18848, Ruminococcus champanellensis JCM 17042, Ruminococcus champanellensis JCM 17042 = 18P13, Ruminococcus sp. 18P13
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