Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RUM_03220BNR/Asp-box repeat. (727 aa)    
Predicted Functional Partners:
RUM_11720
Glycosyl hydrolase family 48.
  
   0.970
RUM_16320
Carbohydrate binding module (family 6).
  
   0.882
RUM_15950
Cellulose binding domain./Glycosyl hydrolase family 9.
  
   0.796
RUM_03400
Beta-1,4-xylanase.
  
 
   0.792
RUM_15960
Glycosyl hydrolase family 9./Carbohydrate binding domain./N-terminal ig-like domain of cellulase.
  
   0.784
RUM_14490
Glycosyl hydrolase family 9.
  
   0.783
RUM_03240
Beta-galactosidase.
  
    0.777
RUM_03210
Lyzozyme M1 (1,4-beta-N-acetylmuramidase).
       0.773
RUM_03230
Alpha-galactosidase.
       0.773
RUM_08690
Glycosyl hydrolase family 9.
  
   0.772
Your Current Organism:
Ruminococcus champanellensis
NCBI taxonomy Id: 213810
Other names: R. champanellensis 18P13 = JCM 17042, Ruminococcus champanellensis 18P13, Ruminococcus champanellensis 18P13 = JCM 17042, Ruminococcus champanellensis DSM 18848, Ruminococcus champanellensis JCM 17042, Ruminococcus champanellensis JCM 17042 = 18P13, Ruminococcus sp. 18P13
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