STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RUM_03580Type II secretory pathway, prepilin signal peptidase PulO and related peptidases. (278 aa)    
Predicted Functional Partners:
RUM_03590
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
 
 
 0.951
RUM_03600
Pilus retraction protein PilT.
 
   
 0.926
RUM_03520
Type II secretory pathway, component PulF.
 
  
 0.905
RUM_03610
Prepilin-type N-terminal cleavage/methylation domain.
 
  
 0.876
RUM_16890
Prepilin-type N-terminal cleavage/methylation domain.
 
  
 0.815
RUM_12890
DNA protecting protein DprA.
  
  
 0.600
RUM_11580
Hypothetical protein.
   
  
 0.569
RUM_03530
Competence protein A.
 
  
 0.550
RUM_03620
Prepilin-type N-terminal cleavage/methylation domain.
 
   
 0.515
RUM_23910
Uncharacterized protein (competence-and mitomycin-induced); Belongs to the CinA family.
     
 0.507
Your Current Organism:
Ruminococcus champanellensis
NCBI taxonomy Id: 213810
Other names: R. champanellensis 18P13 = JCM 17042, Ruminococcus champanellensis 18P13, Ruminococcus champanellensis 18P13 = JCM 17042, Ruminococcus champanellensis DSM 18848, Ruminococcus champanellensis JCM 17042, Ruminococcus champanellensis JCM 17042 = 18P13, Ruminococcus sp. 18P13
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.