Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| RUM_04780 | infC | RUM_04780 | RUM_12850 | Predicted metal-binding, possibly nucleic acid-binding protein. | Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 0.757 |
| RUM_04780 | rplA | RUM_04780 | RUM_09690 | Predicted metal-binding, possibly nucleic acid-binding protein. | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.828 |
| RUM_04780 | rplC | RUM_04780 | RUM_14670 | Predicted metal-binding, possibly nucleic acid-binding protein. | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.727 |
| RUM_04780 | rplK | RUM_04780 | RUM_09700 | Predicted metal-binding, possibly nucleic acid-binding protein. | LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.867 |
| RUM_04780 | rplU | RUM_04780 | RUM_15300 | Predicted metal-binding, possibly nucleic acid-binding protein. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.775 |
| RUM_04780 | rpmF | RUM_04780 | RUM_04770 | Predicted metal-binding, possibly nucleic acid-binding protein. | LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family. | 0.964 |
| RUM_04780 | rpsB | RUM_04780 | RUM_19570 | Predicted metal-binding, possibly nucleic acid-binding protein. | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | 0.771 |
| RUM_04780 | rpsC | RUM_04780 | RUM_14730 | Predicted metal-binding, possibly nucleic acid-binding protein. | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.844 |
| RUM_04780 | rpsF | RUM_04780 | RUM_21750 | Predicted metal-binding, possibly nucleic acid-binding protein. | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. | 0.771 |
| RUM_04780 | rpsP | RUM_04780 | RUM_23240 | Predicted metal-binding, possibly nucleic acid-binding protein. | SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family. | 0.766 |
| infC | RUM_04780 | RUM_12850 | RUM_04780 | Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | Predicted metal-binding, possibly nucleic acid-binding protein. | 0.757 |
| infC | rplA | RUM_12850 | RUM_09690 | Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.935 |
| infC | rplC | RUM_12850 | RUM_14670 | Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.912 |
| infC | rplK | RUM_12850 | RUM_09700 | Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.927 |
| infC | rplU | RUM_12850 | RUM_15300 | Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.900 |
| infC | rpmF | RUM_12850 | RUM_04770 | Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family. | 0.794 |
| infC | rpsB | RUM_12850 | RUM_19570 | Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | 0.958 |
| infC | rpsC | RUM_12850 | RUM_14730 | Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.965 |
| infC | rpsF | RUM_12850 | RUM_21750 | Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. | 0.945 |
| infC | rpsP | RUM_12850 | RUM_23240 | Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family. | 0.852 |
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