Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RUM_06240 | RUM_06920 | RUM_06240 | RUM_06920 | Deoxycytidylate deaminase. | Thymidine kinase. | 0.926 |
RUM_06240 | RUM_17150 | RUM_06240 | RUM_17150 | Deoxycytidylate deaminase. | Thymidylate synthase, flavin-dependent; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant. | 0.920 |
RUM_06240 | RUM_20660 | RUM_06240 | RUM_20660 | Deoxycytidylate deaminase. | 5'/3'-nucleotidase SurE. | 0.900 |
RUM_06240 | dut | RUM_06240 | RUM_06060 | Deoxycytidylate deaminase. | Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. | 0.934 |
RUM_06240 | thyX | RUM_06240 | RUM_20700 | Deoxycytidylate deaminase. | Thymidylate synthase (FAD); Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant. | 0.915 |
RUM_06240 | tmk | RUM_06240 | RUM_20710 | Deoxycytidylate deaminase. | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.922 |
RUM_06920 | RUM_06240 | RUM_06920 | RUM_06240 | Thymidine kinase. | Deoxycytidylate deaminase. | 0.926 |
RUM_06920 | RUM_16290 | RUM_06920 | RUM_16290 | Thymidine kinase. | Cytidine deaminase. | 0.917 |
RUM_06920 | RUM_17150 | RUM_06920 | RUM_17150 | Thymidine kinase. | Thymidylate synthase, flavin-dependent; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant. | 0.910 |
RUM_06920 | RUM_20660 | RUM_06920 | RUM_20660 | Thymidine kinase. | 5'/3'-nucleotidase SurE. | 0.900 |
RUM_06920 | RUM_23880 | RUM_06920 | RUM_23880 | Thymidine kinase. | Thymidine phosphorylase. | 0.924 |
RUM_06920 | deoD | RUM_06920 | RUM_23680 | Thymidine kinase. | Purine-nucleoside phosphorylase. | 0.922 |
RUM_06920 | dut | RUM_06920 | RUM_06060 | Thymidine kinase. | Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. | 0.955 |
RUM_06920 | prfA | RUM_06920 | RUM_00370 | Thymidine kinase. | Bacterial peptide chain release factor 1 (bRF-1); Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. | 0.769 |
RUM_06920 | thyX | RUM_06920 | RUM_20700 | Thymidine kinase. | Thymidylate synthase (FAD); Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant. | 0.910 |
RUM_06920 | tmk | RUM_06920 | RUM_20710 | Thymidine kinase. | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.929 |
RUM_16290 | RUM_06920 | RUM_16290 | RUM_06920 | Cytidine deaminase. | Thymidine kinase. | 0.917 |
RUM_16290 | RUM_20660 | RUM_16290 | RUM_20660 | Cytidine deaminase. | 5'/3'-nucleotidase SurE. | 0.917 |
RUM_16290 | RUM_23880 | RUM_16290 | RUM_23880 | Cytidine deaminase. | Thymidine phosphorylase. | 0.940 |
RUM_16290 | deoD | RUM_16290 | RUM_23680 | Cytidine deaminase. | Purine-nucleoside phosphorylase. | 0.918 |
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