STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RUM_12590Plasmid recombination enzyme. (625 aa)    
Predicted Functional Partners:
RUM_12620
Hypothetical protein.
 
    0.677
RUM_19930
Hypothetical protein.
  
     0.630
RUM_10330
Hypothetical protein.
  
    0.622
RUM_20000
Domain of unknown function DUF87.
  
     0.615
RUM_12040
Helix-turn-helix.
  
    0.605
RUM_20230
Relaxase/Mobilisation nuclease domain.
  
     0.589
RUM_10270
Hypothetical protein.
  
    0.588
RUM_12330
Domain of unknown function DUF87.
  
     0.574
RUM_19960
Hypothetical protein.
  
     0.567
RUM_10280
Hypothetical protein.
  
     0.561
Your Current Organism:
Ruminococcus champanellensis
NCBI taxonomy Id: 213810
Other names: R. champanellensis 18P13 = JCM 17042, Ruminococcus champanellensis 18P13, Ruminococcus champanellensis 18P13 = JCM 17042, Ruminococcus champanellensis DSM 18848, Ruminococcus champanellensis JCM 17042, Ruminococcus champanellensis JCM 17042 = 18P13, Ruminococcus sp. 18P13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.