Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 annotation | node2 annotation | score |
| RUM_00700 | RUM_08410 | Phosphopantetheine attachment site. | Ribosomal RNA small subunit methyltransferase RsmB; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.427 |
| RUM_00700 | RUM_14640 | Phosphopantetheine attachment site. | LuxS protein involved in autoinducer AI2 synthesis; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. | 0.416 |
| RUM_00700 | RUM_22270 | Phosphopantetheine attachment site. | B12 binding domain./Pterin binding enzyme./Homocysteine S-methyltransferase. | 0.460 |
| RUM_07270 | RUM_07500 | O-acetylhomoserine sulfhydrolase. | O-acetylhomoserine sulfhydrolase. | 0.906 |
| RUM_07270 | RUM_08320 | O-acetylhomoserine sulfhydrolase. | Cysteine synthase A; Belongs to the cysteine synthase/cystathionine beta- synthase family. | 0.825 |
| RUM_07270 | RUM_14640 | O-acetylhomoserine sulfhydrolase. | LuxS protein involved in autoinducer AI2 synthesis; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. | 0.901 |
| RUM_07270 | RUM_16570 | O-acetylhomoserine sulfhydrolase. | Homoserine dehydrogenase. | 0.862 |
| RUM_07270 | RUM_21220 | O-acetylhomoserine sulfhydrolase. | Cysteine synthase. | 0.825 |
| RUM_07270 | RUM_22270 | O-acetylhomoserine sulfhydrolase. | B12 binding domain./Pterin binding enzyme./Homocysteine S-methyltransferase. | 0.950 |
| RUM_07500 | RUM_07270 | O-acetylhomoserine sulfhydrolase. | O-acetylhomoserine sulfhydrolase. | 0.906 |
| RUM_07500 | RUM_08320 | O-acetylhomoserine sulfhydrolase. | Cysteine synthase A; Belongs to the cysteine synthase/cystathionine beta- synthase family. | 0.825 |
| RUM_07500 | RUM_14640 | O-acetylhomoserine sulfhydrolase. | LuxS protein involved in autoinducer AI2 synthesis; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. | 0.901 |
| RUM_07500 | RUM_16570 | O-acetylhomoserine sulfhydrolase. | Homoserine dehydrogenase. | 0.859 |
| RUM_07500 | RUM_21220 | O-acetylhomoserine sulfhydrolase. | Cysteine synthase. | 0.825 |
| RUM_07500 | RUM_22270 | O-acetylhomoserine sulfhydrolase. | B12 binding domain./Pterin binding enzyme./Homocysteine S-methyltransferase. | 0.950 |
| RUM_08320 | RUM_07270 | Cysteine synthase A; Belongs to the cysteine synthase/cystathionine beta- synthase family. | O-acetylhomoserine sulfhydrolase. | 0.825 |
| RUM_08320 | RUM_07500 | Cysteine synthase A; Belongs to the cysteine synthase/cystathionine beta- synthase family. | O-acetylhomoserine sulfhydrolase. | 0.825 |
| RUM_08320 | RUM_14640 | Cysteine synthase A; Belongs to the cysteine synthase/cystathionine beta- synthase family. | LuxS protein involved in autoinducer AI2 synthesis; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. | 0.847 |
| RUM_08320 | RUM_21220 | Cysteine synthase A; Belongs to the cysteine synthase/cystathionine beta- synthase family. | Cysteine synthase. | 0.913 |
| RUM_08320 | RUM_22270 | Cysteine synthase A; Belongs to the cysteine synthase/cystathionine beta- synthase family. | B12 binding domain./Pterin binding enzyme./Homocysteine S-methyltransferase. | 0.874 |
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