STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RUM_15400ABC-type cobalt transport system, permease component CbiQ and related transporters. (301 aa)    
Predicted Functional Partners:
RUM_15410
ATPase components of various ABC-type transport systems, contain duplicated ATPase.
 
 
 0.984
RUM_15420
Protein of unknown function (DUF1393).
 
 
 0.981
ecfA
Cobalt transport protein ATP-binding subunit; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
 0.979
RUM_15390
Hypothetical protein.
 
     0.953
RUM_05220
Uncharacterized conserved protein.
  
 0.947
RUM_15380
Hypothetical protein.
 
     0.947
RUM_15370
Hypothetical protein.
 
    0.935
ecfT
ABC-type cobalt transport system, permease component CbiQ and related transporters; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
     
  0.900
RUM_00440
Predicted membrane protein.
   
 
 0.692
RUM_15430
Membrane protein involved in the export of O-antigen and teichoic acid.
       0.576
Your Current Organism:
Ruminococcus champanellensis
NCBI taxonomy Id: 213810
Other names: R. champanellensis 18P13 = JCM 17042, Ruminococcus champanellensis 18P13, Ruminococcus champanellensis 18P13 = JCM 17042, Ruminococcus champanellensis DSM 18848, Ruminococcus champanellensis JCM 17042, Ruminococcus champanellensis JCM 17042 = 18P13, Ruminococcus sp. 18P13
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