STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YPO0076Similar to Salmonella typhimurium hypothetical protein SW:YTL2_SALTY (P37415) (313 aa) fasta scores: E(): 0, 62.3% id in 308 aa and to Yersinia pestis putative transposase Y1072, located on plasmid pMT1, TR:O68786 (EMBL:AF074611) (328 aa) fasta scores: E(): 0, 59.0% id in 312 aa. (319 aa)    
Predicted Functional Partners:
YPO2521
Putative exported protein; Similar to Escherichia coli hypothetical protein YbiJ SW:YBIJ_ECOLI (P41038) (86 aa) fasta scores: E(): 9.4e-15, 54.7% id in 86 aa, and to Escherichia coli hypothetical protein YcfR SW:YCFR_ECOLI (P75953) (85 aa) fasta scores: E(): 4.8e-14, 55.8% id in 86 aa.
  
     0.506
YPO2119
Putative phage tail protein; C-terminal region is similar to bacteriophage lambda minor tail protein precursor H SW:VMTH_LAMBD (P03736) (853 aa) fasta scores: E(): 0, 28.1% id in 915 aa, and to bacteriophage N15 protein gp16 TR:O64330 (EMBL:AF064539) (838 aa) fasta scores: E(): 1.5e-23, 29.4% id in 889 aa.
  
    0.477
dmsC-2
Similar to Escherichia coli anaerobic dimethyl sulfoxide reductase chain C DmsC SW:DMSC_ECOLI (P18777) (287 aa) fasta scores: E(): 0, 66.7% id in 285 aa, and identical to the previously sequenced to Yersinia pestis dimethyl sulfoxide reductase subunit C DmsC TR:Q9X6B4 (EMBL:AF135170) (286 aa) fasta scores: E(): 0, 100.0% id in 286 aa.
  
     0.421
mdl
Probable ATP transporter (ATP-binding protein); Similar to Escherichia coli multidrug resistance-like ATP-binding protein MdlB or Mdl SW:MDLB_ECOLI (P75706) (593 aa) fasta scores: E(): 0, 78.9% id in 583 aa, and to Buchnera aphidicola (subsp. Acyrthosiphon pisum) multidrug resistance-like ATP-binding protein MdlB or Bu480 TR:BAB13177 (EMBL:AP001119) (590 aa) fasta scores: E(): 0, 56.9% id in 576 aa.
  
     0.416
YPO3518
Putative exported protein; Similar to Escherichia coli hypothetical 11.2 kDa protein in argR-cafA intergenic region precursor YhcN SW:YHCN_ECOLI (P46477) (87 aa) fasta scores: E(): 4.9e-16,54.0% id in 87 aa, and to Escherichia coli hypothetical 8.8 kDa protein in ndh-mfd intergenic region precursor YcfR SW:YCFR_ECOLI (P75953) (85 aa) fasta scores: E(): 8.4e-06,38.4% id in 86 aa.
  
     0.405
YPO1092
Putative DNA-binding prophage protein; Similar to Pseudomonas aeruginosa integrase/recombinase XerD TR:AAG07125 (EMBL:AE004793) (298 aa) fasta scores: E(): 0.027, 28.0% id in 239 aa, and to Chlamydia pneumoniae integrase/recombinase XerC or CP0752 TR:Q9Z9F7 (EMBL:AE001587) (312 aa) fasta scores: E(): 0.16,23.3% id in 232 aa; Belongs to the 'phage' integrase family.
  
     0.401
YPO1440
Similar to Escherichia coli helicase IV HelD SW:HELD_ECOLI (P15038) (684 aa) fasta scores: E(): 0, 66.7% id in 684 aa, and to Vibrio cholerae helicase IV VCA0717 TR:Q9KLM6 (EMBL:AE004401) (699 aa) fasta scores: E(): 0,37.2% id in 682 aa. CDS contains an internal deletion or deletions, around codon 320, relative to the E. coli and V. cholerae proteins.
  
    0.400
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
Server load: medium (64%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.