Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
YPO0100Hypothetical protein; No significant database hits. (79 aa)    
Predicted Functional Partners:
YPO0101
Hypothetical protein; Doubtful CDS with no significant database hits.
       0.458
YPO0099
Putative exported protein; Similar to several members of the HlyD family of secretion proteins e.g. Escherichia coli colicin V secretion protein CvaA SW:CVAA_ECOLI (P22519) (413 aa) fasta scores: E(): 0, 47.1% id in 410 aa and to Escherichia coli MtfA TR:Q46972 (EMBL:U47048) (414 aa) fasta scores: E(): 0, 46.6% id in 410 aa.
       0.435
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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