Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
YPO0263Similar to Salmonella typhimurium type III secretion system apparatus lipoprotein SsaJ SW:SSAJ_SALTY (P74852) (249 aa) fasta scores: E(): 0, 45.5% id in 253 aa. (243 aa)    
Predicted Functional Partners:
YPO0271
Similar to Salmonella typhimurium secretion system apparatus protein SsaS SW:SSAS_SALTY (P74891) (88 aa) fasta scores: E(): 5.8e-16, 60.8% id in 79 aa.
 
 
 0.996
YPO0272
Similar to Salmonella typhimurium secretion system apparatus protein SsaT SW:SSAT_SALTY (P96068) (259 aa) fasta scores: E(): 0, 51.3% id in 234 aa.
 
 
 0.996
YPO0266
Similar to Salmonella typhimurium type III secretion system apparatus protein SsaV SW:SSAV_SALTY (P74856) (681 aa) fasta scores: E(): 0, 58.1% id in 670 aa.
 
 
 0.995
YPO0257
Possible type III secretion protein; Similar to Salmonella typhimurium Pathogenicity island secretion protein SpiA TR:P74864 (EMBL:U51927) (497 aa) fasta scores: E(): 0, 51.5% id in 499 aa.
 
 
 0.993
YPO0270
Putative type III secretion apparatus protein; Similar to Salmonella typhimurium virulence protein YscR SW:YSCR_SALTY (P74890) (215 aa) fasta scores: E(): 0,59.9% id in 217 aa.
 
 
 0.990
YPO0269
Similar to Salmonella typhimurium secretion system apparatus protein SsaQ SW:SSAQ_SALTY (P74860) (322 aa) fasta scores: E(): 1.1e-20, 26.3% id in 285 aa.
 
  
 0.969
YPO0273
Similar to Salmonella typhimurium secretion system apparatus protein SsaU SW:SSAU_SALTY (P96069) (352 aa) fasta scores: E(): 0, 48.6% id in 354 aa.
 
  
 0.952
YPO0816
Similar to Klebsiella pneumoniae general secretion pathway protein D GspD SW:GSPD_KLEPN (P15644) (660 aa) fasta scores: E(): 0, 48.9% id in 640 aa, and to Aeromonas salmonicida general secretion pathway protein D ExeD SW:GSPD_AERSA (P45778) (678 aa) fasta scores: E(): 0, 47.1% id in 633 aa. The CDS contains an internal deletion relative to other orthologues around codon 380. The effect on function is unknown.
  
 
 0.949
YPO0258
Similar to several type III secretion proteins including: Escherichia coli EscD TR:O52148 (EMBL:AF022236) (406 aa) fasta scores: E(): 1.8e-26, 25.1% id in 414 aa and Yersinia enterocolitica Yop proteins translocation protein D YscD SW:YSCD_YEREN (Q01245) (418 aa) fasta scores: E(): 0.00018, 23.5% id in 404 aa.
  
  
 0.932
YPO0267
Putative type III secretion system ATP synthase; Similar to many secretion system proteins including: Salmonella typhimurium probable secretion system apparatus ATP synthase SsaN SW:SSAN_SALTY (P74857) (433 aa) fasta scores: E(): 0, 58.1% id in 432 aa, Pseudomonas aeruginosa ATP synthase in type III secretion system PA1697 TR:AAG05086 (EMBL:AE004596) (440 aa) fasta scores: E(): 0,55.8% id in 423 aa and to Bacillus subtilis flagellum-specific ATP synthase FliI SW:FLII_BACSU (P23445) (440 aa) fasta scores: E(): 0, 46.6% id in 423 aa. Note the overlap with the upstream CDS.
 
  
 0.910
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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