Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
b4364Putative membrane protein; Similar to Escherichia coli hypothetical 30.5 kDa protein in dnaT-bglJ intergenic region YjjP SW:YJJP_ECOLI (P39402) (277 aa) fasta scores: E(): 0, 74.1% id in 251 aa,and to Vibrio cholerae hypothetical protein Vc0438 TR:Q9KUS7 (EMBL:AE004131) (289 aa) fasta scores: E(): 0,49.4% id in 253 aa. (266 aa)    
Predicted Functional Partners:
YPO0485
Putative membrane protein; Similar to Vibrio cholerae hypothetical protein Vc0439 TR:Q9KUS6 (EMBL:AE004131) (161 aa) fasta scores: E(): 0, 60.7% id in 150 aa, and to Escherichia coli protein YjjB SW:YJJB_ECOLI (P18389) (128 aa) fasta scores: E(): 2.6e-26, 73.1% id in 104 aa.
  
 0.991
YPO1778
Similar to Escherichia coli hypothetical protein YqfB SW:YQFB_ECOLI (Q46828) (103 aa) fasta scores: E(): 5.4e-23, 65.7% id in 99 aa, and to Haemophilus influenzae hypothetical protein HI1394 SW:YQFB_HAEIN (P44172) (123 aa) fasta scores: E(): 1.5e-21, 60.8% id in 97 aa; Belongs to the UPF0267 family.
  
     0.615
folA
Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.
       0.548
YPO1616
Similar to Escherichia coli hypothetical protein YcfP SW:YCFP_ECOLI (P75950) (199 aa) fasta scores: E(): 0,80.0% id in 180 aa, and to Vibrio cholerae hypothetical protein VC1892 TR:Q9KQV6 (EMBL:AE004265) (179 aa) fasta scores: E(): 0, 72.9% id in 177 aa; Belongs to the UPF0227 family.
  
     0.482
YPO0483
Putative LysE type translocator; Similar to Escherichia coli threonine efflux protein RhtC SW:RHTC_ECOLI (P27846) (206 aa) fasta scores: E(): 2.9e-17, 31.6% id in 206 aa, and to Bacillus subtilis hypothetical 23.4 kDa protein in aapA-sigV intergenic region YrhP SW:YRHP_BACSU (O05406) (210 aa) fasta scores: E(): 1.2e-19, 34.1% id in 211 aa.
     
 0.431
ybaR
Putative cation-transporting ATPase; Involved in copper export.
     
 0.416
menC
Putative O-succinylbenzoate-CoA synthase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).
  
     0.411
YPO3233
Putative exported protein; Similar to Vibrio cholerae hypothetical protein Vc2288 TR:Q9KPS4 (EMBL:AE004300) (77 aa) fasta scores: E(): 1.4e-14, 58.8% id in 68 aa, and to Neisseria meningitidis (serogroup A) putative periplasmic protein Nma0745 or Nmb0562 TR:Q9JRI9 (EMBL:AL162754) (71 aa) fasta scores: E(): 1.2e-09, 49.2% id in 61 aa.
  
     0.400
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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