STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YPO0515Putative membrane protein; Similar to Legionella pneumophila IcmF protein TR:O54529 (EMBL:Y15044) (973 aa) fasta scores: E(): 8.3e-11, 21.0% id in 1008 aa, and to Pseudomonas aeruginosa hypothetical protein PA0077 TR:AAG03467 (EMBL:AE004446) (1101 aa) fasta scores: E(): 0, 25.5% id in 1114 aa. In Legionella pneumophila, mutations in icmF resulted in a reduction in conjugation frequency. (1150 aa)    
Predicted Functional Partners:
YPO0514
Putative OmpA-family membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein PA0078 TR:AAG03468 (EMBL:AE004447) (449 aa) fasta scores: E(): 4.5e-09, 28.2% id in 457 aa.
 
 
 0.968
YPO0501
Similar to Pseudomonas aeruginosa hypothetical protein PA0084 TR:AAG03474 (EMBL:AE004447) (498 aa) fasta scores: E(): 0, 63.9% id in 479 aa, and to Edwardsiella ictaluri hypothetical protein EIP55 TR:O52406 (EMBL:AF037441) (495 aa) fasta scores: E(): 0, 46.6% id in 494 aa. Similar to YPO2938 (61.4% identity in 479 aa overlap).
 
 
 0.947
YPO0513
Similar to Pseudomonas aeruginosa hypothetical protein PA0079 TR:AAG03469 (EMBL:AE004447) (444 aa) fasta scores: E(): 0, 35.3% id in 445 aa, and to Pseudomonas aeruginosa hypothetical protein PA1667 TR:AAG05056 (EMBL:AE004594) (443 aa) fasta scores: E(): 0, 32.0% id in 450 aa.
 
 
 0.935
YPO0499
Hypothetical protein; Weakly similar to Pseudomonas aeruginosa hypothetical protein PA0082 TR:AAG03472 (EMBL:AE004447) (344 aa) fasta scores: E(): 0.00022, 22.9% id in 341 aa.
 
 
 0.928
YPO0505
Similar to Pseudomonas aeruginosa hypothetical protein PA0089 TR:AAG03479 (EMBL:AE004447) (348 aa) fasta scores: E(): 1.2e-22, 28.8% id in 316 aa, and to Pseudomonas aeruginosa hypothetical protein PA2370 TR:AAG05758 (EMBL:AE004663) (338 aa) fasta scores: E(): 3.1e-11, 27.6% id in 301 aa.
 
 
 0.856
YPO0507
Similar to Pseudomonas aeruginosa hypothetical protein PA0095 TR:AAG03485 (EMBL:AE004448) (741 aa) fasta scores: E(): 0, 31.5% id in 728 aa, and to Pseudomonas aeruginosa hypothetical protein PA0091 TR:AAG03481 (EMBL:AE004447) (643 aa) fasta scores: E(): 0, 32.7% id in 646 aa.
 
  
 0.850
YPO0500
Similar to Pseudomonas aeruginosa hypothetical protein PA0083 TR:AAG03473 (EMBL:AE004447) (172 aa) fasta scores: E(): 0, 59.9% id in 162 aa, and to Edwardsiella ictaluri putative protein EIP20 TR:O52407 (EMBL:AF037441) (170 aa) fasta scores: E(): 2.1e-20, 41.1% id in 163 aa. Similar to YPO2939 (59.3% identity in 162 aa overlap).
 
 
 0.849
YPO2938
Conserved hypothetical protein; Similar to Edwardsiella ictaluri putative hypothetical protein Eip55 TR:O52406 (EMBL:AF037441) (495 aa) fasta scores: E(): 0, 49.9% id in 495 aa, and to Vibrio cholerae hypothetical protein VCA0108 TR:Q9KN57 (EMBL:AE004353) (492 aa) fasta scores: E(): 0, 39.6% id in 498 aa. Similar to YPO0501 (61.4% identity in 479 aa overlap).
 
 
 0.848
YPO0504
Similar to Pseudomonas aeruginosa hypothetical protein PA0088 TR:AAG03478 (EMBL:AE004447) (619 aa) fasta scores: E(): 0, 29.0% id in 617 aa.
 
  
 0.846
YPO2723
Putative OmpA family protein; Poor database matches, similar to Pseudomonas aeruginosa hypothetical protein PA0078 TR:AAG03468 (EMBL:AE004447) (449 aa) fasta scores: E(): 3.7e-25, 35.1% id in 265 aa. This CDS may have been disrupted by the insertion of the upstream IS100 element; was marked partial.
 
 
 0.842
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.