STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YPO0635Hypothetical protein; Doubtful CDS with no significant database hits. (66 aa)    
Predicted Functional Partners:
YPO0636
Hypothetical protein; Doubtful CDS with no significant database hits.
       0.531
YPO0634
Hypothetical protein (pseudogene); Similar to Escherichia coli cell filamentation protein Fic SW:FIC_ECOLI (P20605) (200 aa) fasta scores: E(): 0.0094, 26.6% id in 184 aa, and to Lactococcus lactis putative mobilization protein MobC TR:O54679 (EMBL:AF036485) (200 aa) fasta scores: E(): 9.6e-05, 26.1% id in 176 aa. Contains a frameshift after codon 67. The sequence has been checked and is believed to be correct.
  
    0.451
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.