STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YPO0641Hypothetical protein; No significant database hits. (134 aa)    
Predicted Functional Partners:
YPO0640
Hypothetical protein; No significant database hits.
  
   
0.921
YPO0641a
Hypothetical protein; Poor database hits. Similar to C-terminal region of Lactococcus lactis bacteriophage hypothetical protein TR:O53062 (EMBL:Y11901) (136 aa) fasta scores: E(): 0.83,34.7% id in 75 aa.
  
    0.754
YPO0639
Hypothetical protein; C-terminal region of the CDS is similar to an internal region of Pseudomonas aeruginosa flagellin FliC TR:O33419 (EMBL:L81176) (259 aa) fasta scores: E(): 2.1,25.6% id in 242 aa, and to the C-terminal region of Escherichia coli hypothetical protein YhhZ SW:YHHZ_ECOLI (P46855) (392 aa) fasta scores: E(): 8.7e-17, 33.3% id in 228 aa. CDS YP2868 and YP2962 have identity to the the N-terminal region of Escherichia coli hypothetical protein YhhZ. There are no IS100 insertion elements proximal to either CDS (there is an IS200 proximal to YP2962) therefore it is not poss [...]
  
    0.666
YPO0642
Hypothetical protein; No significant database hits.
  
    0.437
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.