STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YPO0680Putative DedA-family membrane protein; Similar to Escherichia coli hypothetical protein YghB SW:YGHB_ECOLI (P33196) (219 aa) fasta scores: E(): 0,70.2% id in 215 aa, and to Escherichia coli hypothetical protein YqjA SW:YQJA_ECOLI (P42614) (220 aa) fasta scores: E(): 0, 60.9% id in 215 aa. Similar to YPO0574 (63.8% identity in 218 aa overlap). (220 aa)    
Predicted Functional Partners:
fla-4
Similar to Salmonella typhimurium flagellar basal-body rod protein FlgC or FlaW or Fla FIII SW:FLGC_SALTY (P16438) (134 aa) fasta scores: E(): 0, 79.9% id in 134 aa, and to Yersinia enterocolitica flagellar basal-body rod protein FlgC SW:FLGC_YEREN (Q56894) (134 aa) fasta scores: E(): 0, 96.3% id in 134 aa.
   
   0.519
flgC
Similar to Escherichia coli flagellar basal-body rod protein FlgC SW:FLGC_ECOLI (P75935) (134 aa) fasta scores: E(): 5.2e-17, 46.1% id in 141 aa, and to Vibrio parahaemolyticus possible flagellar basal-body rod protein LfgC TR:Q56720 (EMBL:U51896) (144 aa) fasta scores: E(): 6.8e-28, 57.0% id in 142 aa.
   
   0.516
metC-2
Similar to Escherichia coli cystathionine beta-lyase MetC SW:METC_ECOLI (P06721) (395 aa) fasta scores: E(): 0,70.3% id in 391 aa, and to Salmonella typhimurium cystathionine beta-lyase MetC SW:METC_SALTY (P18949) (395 aa) fasta scores: E(): 0, 69.6% id in 391 aa.
  
    0.461
mtfA
Conserved hypothetical protein; Involved in the regulation of ptsG expression by binding and inactivating Mlc.
  
    0.436
nifJ
Similar to Escherichia coli probable pyruvate-flavodoxin oxidoreductase YdbK SW:NIFJ_ECOLI (P52647) (1174 aa) fasta scores: E(): 0, 80.5% id in 1177 aa, and to Klebsiella pneumoniae pyruvate-flavodoxin oxidoreductase NifJ SW:NIFJ_KLEPN (P03833) (1171 aa) fasta scores: E(): 0, 48.0% id in 1184 aa.
  
  
 0.423
dniR
Similar to Escherichia coli membrane-bound lytic murein transglycosylase D precursor MltD SW:MLTD_ECOLI (P23931) (452 aa) fasta scores: E(): 0, 63.4% id in 470 aa.
   
   0.408
pgsA
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; This protein catalyzes the committed step to the synthesis of the acidic phospholipids; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
 
 0.406
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
Server load: medium (76%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.