STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YPO0695Putative membrane protein; Similar to Actinobacillus actinomycetemcomitans membrane protein TR:O66151 (EMBL:AB005741) (142 aa) fasta scores: E(): 2.6e-15, 33.3% id in 129 aa, and to Caulobacter crescentus pilus biogenesis protein PilD TR:Q9L719 (EMBL:AF229646) (170 aa) fasta scores: E(): 0.061, 26.6% id in 158 aa. (140 aa)    
Predicted Functional Partners:
YPO0694
Putative membrane protein (pseudogene); 1 probable transmembrane helix predicted.
  
  
 0.954
YPO0689
Putative membrane protein; Similar to Actinobacillus actinomycetemcomitans putative nonspecific tight adherence protein TabB TR:AAD38173 (EMBL:AF152598) (295 aa) fasta scores: E(): 0,33.8% id in 293 aa.
 
  
 0.917
YPO0691
Hypothetical protein; Poor database hits. Weakly similar to Synechocystis sp hypothetical protein SLR0105 TR:Q55876 (EMBL:D64004) (462 aa) fasta scores: E(): 3.3, 21.1% id in 336 aa.
  
  
 0.749
YPO0688
Putative exported protein; Similar to Actinobacillus actinomycetemcomitans putative nonspecific tight adherence protein TadC TR:Q9S4A8 (EMBL:AF152598) (288 aa) fasta scores: E(): 9.5e-26, 30.9% id in 285 aa.
 
   
 0.710
YPO2884
Putative exported protein; No significant database matches.
  
     0.697
YPO1192
Conserved hypothetical protein; Weakly similar to others of unknown function Bacillus halodurans BH2933 protein BH2933 TR:Q9K8S0 (EMBL:AP001517) (269 aa) fasta scores: E(): 2e-09, 26.8% id in 284 aa, and to Nostoc sp. GSV224 hypothetical protein TR:Q9RAH0 (EMBL:AF204805) (265 aa) fasta scores: E(): 0.12,22.3% id in 292 aa.
  
     0.661
rzpR
Similar to Escherichia coli putative endopeptidase from lambdoid prophage RAC RzpR SW:RZPR_ECOLI (P77551) (147 aa) fasta scores: E(): 1.7e-14, 41.7% id in 151 aa, and to Salmonella typhimurium gp15 protein TR:Q56118 (EMBL:X67137) (156 aa) fasta scores: E(): 2.4e-14, 40.1% id in 152 aa.
  
     0.658
YPO1943
Putative membrane protein; Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC53 (EMBL:AL031866) (469 aa) fasta scores: E(): 0, 100.0% id in 469 aa. Similar to Pasteurella multocida hypothetical protein Pm0451 TR:AAK02535 (EMBL:AE006080) (465 aa) fasta scores: E(): 0, 49.1% id in 468 aa.
  
     0.634
hslJ
Similar to Escherichia coli heat shock protein HslJ SW:HSLJ_ECOLI (P52644) (140 aa) fasta scores: E(): 3.3e-19,45.8% id in 153 aa, and to Vibrio cholerae heat shock protein HslJ TR:Q9KRH9 (EMBL:AE004244) (147 aa) fasta scores: E(): 3.3e-11, 36.1% id in 122 aa.
  
     0.602
napD
Conserved hypothetical protein; Chaperone for NapA, the catalytic subunit of the periplasmic nitrate reductase. It binds directly and specifically to the twin- arginine signal peptide of NapA, preventing premature interaction with the Tat translocase and premature export.
  
     0.601
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
Server load: medium (68%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.