STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YPO0698Similar to Escherichia coli outer membrane usher protein PapC SW:PAPC_ECOLI (P07110) (836 aa) fasta scores: E(): 0, 48.4% id in 834 aa, and to Proteus mirabilis outer membrane usher protein MrpC TR:Q51904 (EMBL:Z32686) (871 aa) fasta scores: E(): 0, 45.8% id in 825 aa. (826 aa)    
Predicted Functional Partners:
YPO0699
Similar to Escherichia coli fimbrial chaperone protein PapD SW:PAPD_ECOLI (P15319) (239 aa) fasta scores: E(): 0, 59.1% id in 232 aa, and to Proteus mirabilis pili chaperone protein MrpD TR:Q51905 (EMBL:Z32686) (252 aa) fasta scores: E(): 0, 55.5% id in 245 aa.
 
   0.974
mrpA
Putative mannose-resistant/Proteus-like fimbrial protein; Similar to Serratia marcescens fimbria A protein SmfA SW:FMA_SERMA (P13421) (174 aa) fasta scores: E(): 1.4e-30, 53.8% id in 169 aa, and to Proteus mirabilis major MR/P (mannose-resistant/Proteus-like) fimbrial protein MrpA SW:MRPA_PROMI (Q03011) (175 aa) fasta scores: E(): 1.1e-21,46.5% id in 172 aa.
 
  0.939
YPO4044
Fimbrial usher protein (pseudogene); 1 probable transmembrane helix predicted.
 
  0.938
YPO2945
Frimbrial protein; Similar to Proteus mirabilis uroepithelial cell adherence protein Uca TR:Q51889 (EMBL:U28420) (180 aa) fasta scores: E(): 1.1e-13, 36.7% id in 177 aa, and to Escherichia coli F17A fimbrial subunit protein TR:Q9RH95 (EMBL:AF055307) (180 aa) fasta scores: E(): 1.1e-13, 38.4% id in 172 aa.
 
 0.921
YPO0700
Fimbrial protein; Similar to Escherichia coli fimbrial lectin GafD TR:Q47341 (EMBL:L33969) (343 aa) fasta scores: E(): 2.9e-06, 23.6% id in 360 aa, and to Escherichia coli adhesin F17d-G TR:Q47199 (EMBL:L77091) (344 aa) fasta scores: E(): 3.8e-06, 24.6% id in 370 aa.
  
  0.911
YPO1707
Similar to Escherichia coli F17 fimbrial protein precursor F17A-A SW:FMF3_ECOLI (P11312) (180 aa) fasta scores: E(): 4.3e-15, 40.2% id in 174 aa, and to Xylella fastidiosa fimbrial subunit precursor Xf0083 TR:Q9PH63 (EMBL:AE003862) (184 aa) fasta scores: E(): 7.5e-17, 44.2% id in 190 aa.
 
 0.910
psaB
Chaperone protein PsaB precursor; Required for the biogenesis of the pH 6 antigen; Belongs to the periplasmic pilus chaperone family.
  
   0.906
YPO1918
Probable pili assembly chaperone; Previously sequenced as Yersinia pestis hypothetical protein TR:Q9Z394 (EMBL:AL031866) (246 aa) fasta scores: E(): 0, 100.0% id in 246 aa.
  
   0.906
YPO2944
Similar to Escherichia coli chaperone protein EcpD SW:ECPD_ECOLI (P33128) (246 aa) fasta scores: E(): 0, 40.2% id in 246 aa, and to Pseudomonas aeruginosa probable pili asembly chaperone PA4085 TR:AAG07472 (EMBL:AE004825) (248 aa) fasta scores: E(): 6.4e-30, 38.6% id in 220 aa.
  
   0.906
YPO4041
Similar to Proteus mirabilis fimbrial chaperone MrpD TR:Q51905 (EMBL:Z32686) (252 aa) fasta scores: E(): 0,44.9% id in 247 aa, and to Escherichia coli hypothetical fimbrial chaperone YbgP SW:YBGP_ECOLI (P75749) (242 aa) fasta scores: E(): 0, 47.1% id in 238 aa.
  
   0.906
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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