STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YPO0701Periplasmic binding protein; Similar to Escherichia coli siderophore ferrienterobactin-binding periplasmic protein precursor FepB SW:FEPB_ECOLI (P14609) (318 aa) fasta scores: E(): 0,53.9% id in 293 aa, and to Pseudomonas aeruginosa ferrienterobactin-binding periplasmic protein FepB TR:AAG07546 (EMBL:AE004832) (301 aa) fasta scores: E(): 6.1e-32, 38.1% id in 278 aa. (337 aa)    
Predicted Functional Partners:
irp1
Previously sequenced as Yersinia pestis yersiniabactin biosynthetic protein Irp1 TR:Q9Z373 (EMBL:AL031866) (3163 aa) fasta scores: E(): 0, 100.0% id in 3163 aa. Similar to Yersinia enterocolitica HMWP1 protein Irp1 TR:O54511 (EMBL:Y12527) (3161 aa) fasta scores: E(): 0, 97.9% id in 3163 aa.
  
  
 0.905
YPO0776
Putative siderophore biosysnthesis protein; Similar to N-terminus of Yersinia pestis yersiniabactin biogenesis protein Irp2 TR:Q9Z399 (EMBL:AL031866) (2041 aa) fasta scores: E(): 0, 31.1% id in 1659 aa, and to Pseudomonas aeruginosa pyochelin synthetase PchF TR:Q9RFM7 (EMBL:AF184622) (1809 aa) fasta scores: E(): 0, 34.1% id in 1957 aa. and to Vibrio anguillarum anguibactin biosynthesis protein AngR SW:ANGR_VIBAN (P19828) (1048 aa) fasta scores: E(): 0, 32.1% id in 844 aa. CDS contains a glutamine and threonine rich imperfect repeat region, residues 996 to 1065.
 
  
 0.899
irp2
Previously sequenced as Yersinia pestis yersiniabactin biosynthetic protein Irp2 TR:Q9Z399 (EMBL:AL031866) (2041 aa) fasta scores: E(): 0, 100.0% id in 2035 aa. Similar to Yersinia enterocolitica high-molecular-weight protein 2 Irp2 SW:HMP2_YEREN (P48633) (2035 aa) fasta scores: E(): 0, 98.6% id in 2035 aa. The previously sequenced Yersinia pestis Irp2 ORF starts at a valine situated 6 aa upstream from the methionine. However,the methionine start, has a good ribosome-binding site.
  
  
 0.893
YPO1534
Putative iron-siderophore transport system,membrane permease component; Similar to Vibrio cholerae cytoplasmic membrane permease ViuG or vc0778 TR:Q9RCF4 (EMBL:U52150) (358 aa) fasta scores: E(): 8.1e-32, 36.5% id in 329 aa, and to Yersinia enterocolitica FepG TR:Q9X3S2 (EMBL:AF082879) (347 aa) fasta scores: E(): 2.5e-31, 37.0% id in 343 aa; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.877
irp5
Previously sequenced: Yersinia pestis yersiniabactin siderophore biosynthetic protein YbtE TR:Q56950 (EMBL:U50364) (525 aa) fasta scores: E(): 0, 100.0% id in 525 aa. Similar to Yersinia enterocolitica Irp5 protein TR:O54514 (EMBL:Y12527) (525 aa) fasta scores: E(): 0,97.9% id in 525 aa.
 
  
 0.857
YPO1533
Putative iron-siderophore transport system,ATP-binding component; Similar to Vibrio cholerae ferric vibriobactin ABC transporter, ATP-binding protein vc0779 TR:Q9KTV8 (EMBL:AE004163) (279 aa) fasta scores: E(): 0, 55.9% id in 263 aa, and to Streptomyces coelicolor putative iron-siderophore uptake system ATP-binding component sci51.25C TR:Q9S215 (EMBL:AL109848) (301 aa) fasta scores: E(): 0, 57.2% id in 264 aa.
 
 
 0.794
YPO0682
MotA/TolQ/ExbB proton channel family protein; Similar to Escherichia coli biopolymer transport protein ExbB SW:EXBB_ECOLI (P18783) (244 aa) fasta scores: E(): 0, 70.8% id in 236 aa, and to Pseudomonas putida biopolymer transport protein ExbB SW:EXBB_PSEPU (Q05605) (329 aa) fasta scores: E(): 0, 62.7% id in 236 aa.
   
  
 0.719
YPO0683
Similar to Escherichia coli biopolymer transport protein ExbD SW:EXBD_ECOLI (P18784) (141 aa) fasta scores: E(): 0, 67.9% id in 140 aa, and to Pseudomonas putida biopolymer transport protein ExbD SW:EXBD_PSEPU (Q05606) (142 aa) fasta scores: E(): 2.6e-31, 67.1% id in 140 aa.
   
  
 0.718
YPO1528
Similar to Escherichia coli ferric iron reductase protein FhuF SW:FHUF_ECOLI (P39405) (262 aa) fasta scores: E(): 8.4e-33, 35.0% id in 246 aa.
   
  
 0.664
YPO1537
Putative iron-siderophore receptor; Similar to Bordetella pertussis ferric alcaligin siderophore receptor FauA TR:Q9X6A5 (EMBL:AF135154) (734 aa) fasta scores: E(): 0, 38.2% id in 733 aa, and to Escherichia coli FhuE receptor precursor SW:FHUE_ECOLI (P16869) (729 aa) fasta scores: E(): 0, 37.0% id in 695 aa.
   
  
 0.642
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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