Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
YPO0761Hypothetical protein; No significant database hits. (80 aa)    
Predicted Functional Partners:
YPO0762
Similar to Pseudomonas aeruginosa hypothetical protein PA2684 TR:AAG06072 (EMBL:AE004696) (1317 aa) fasta scores: E(): 3.9e-30, 27.3% id in 1251 aa, and to Escherichia coli putative rhs protein RhsD SW:RHSD_ECOLI (P16919) (1426 aa) fasta scores: E(): 1e-24, 26.5% id in 1288 aa. The CDS has an extension at the N-terminal end in comparison to other orthologues, possible alternative translational starts.
       0.414
YPO0763
Hypothetical protein; Poor database hits. C-terminal region of CDS is similar to N-terminal region of Deinococcus radiodurans possible carboxypeptidase DR2423 TR:Q9RRR3 (EMBL:AE002072) (503 aa) fasta scores: E(): 9.2, 21.9% id in 274 aa.
       0.404
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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