Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
YPO0803Hypothetical protein; No significant database hits. (133 aa)    
Predicted Functional Partners:
YPO0804
Putative regulatory membrane protein; Similar to Vibrio cholerae toxin corregulated pilus biosynthesis protein TcpP SW:TCPP_VIBCH (P29485) (221 aa) fasta scores: E(): 1.5e-05, 28.7% id in 181 aa, N-terminus is similar to the N-terminus of Vibrio fischeri transmembrane transcriptional activator ToxR TR:Q56689 (EMBL:L29053) (316 aa) fasta scores: E(): 8.5e-05, 36.6% id in 101 aa.
       0.773
cheD
Similar to Escherichia coli methyl-accepting chemotaxis protein I CheD SW:MCP1_ECOLI (P02942) (551 aa) fasta scores: E(): 0, 40.2% id in 537 aa, and to Enterobacter aerogenes methyl-accepting chemotaxis serine transducer Tse SW:MCPS_ENTAE (P21822) (557 aa) fasta scores: E(): 0, 40.5% id in 523 aa.
       0.443
YPO0805
Putative lipoprotein; Similar to Klebsiella pneumoniae pullulanase secretion protein PulS SW:PULS_KLEPN (P20440) (125 aa) fasta scores: E(): 0.0042, 28.9% id in 97 aa, and to enterohemorrhagic Escherichia coli (EHEC) O157:H7 large virulence plasmid (pO157) protein EtpO TR:O32577 (EMBL:Y09824) (133 aa) fasta scores: E(): 0.0045, 32.9% id in 79 aa.
       0.420
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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