STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YPO0806Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. (280 aa)    
Predicted Functional Partners:
YPO0813
Similar to Erwinia carotovora general secretion pathway protein G OutG SW:GSPG_ERWCA (P31586) (156 aa) fasta scores: E(): 0, 69.9% id in 133 aa, and to Erwinia chrysanthemi general secretion pathway protein G OutG SW:GSPG_ERWCH (P31585) (153 aa) fasta scores: E(): 0, 67.9% id in 134 aa.
 
  
 0.959
hofC
Putative type II secretion system protein; Similar to Escherichia coli protein transport protein HofC or HopC SW:HOFC_ECOLI (P36646) (400 aa) fasta scores: E(): 0, 38.9% id in 398 aa, and to Pseudomonas aeruginosa fimbrial assembly protein PilC SW:PILC_PSEAE (P22609) (406 aa) fasta scores: E(): 0, 34.2% id in 401 aa.
 
  
 0.952
hofB
Putative type II secretion system protein; Similar to Escherichia coli protein transport protein HofB or HopB SW:HOFB_ECOLI (P36645) (461 aa) fasta scores: E(): 0, 45.3% id in 490 aa, and to Aeromonas salmonicida type IV pilus assembly protein TapB TR:O85279 (EMBL:AF059248) (568 aa) fasta scores: E(): 0, 43.5% id in 494 aa.
 
 
 0.936
YPO0815
General secretion pathway protein F (pseudogene); Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.922
YPO0811
Similar to Aeromonas hydrophila general secretion pathway protein I ExeI SW:GSPI_AERHY (P31737) (119 aa) fasta scores: E(): 4.3e-15, 41.2% id in 102 aa, and to Erwinia chrysanthemi general secretion pathway protein I precursor OutI SW:GSPI_ERWCH (P24688) (125 aa) fasta scores: E(): 8.1e-13, 34.9% id in 109 aa.
  
  
 0.918
YPO1394
Putative membrane protein; Similar to Neisseria gonorrhoeae competence protein ComA SW:COMA_NEIGO (P51973) (691 aa) fasta scores: E(): 1.8e-27, 28.9% id in 714 aa, and to Escherichia coli hypothetical protein YcaI SW:YCAI_ECOLI (P37443) (780 aa) fasta scores: E(): 0, 41.9% id in 756 aa.
 
  
 0.900
YPO0940
Conserved hypothetical protein; Similar to Pseudomonas aeruginosa twitching mobility protein PilT SW:PILT_PSEAE (P24559) (344 aa) fasta scores: E(): 0, 45.2% id in 330 aa, and to Escherichia coli hypothetical protein YggR SW:YGGR_ECOLI (P52052) (326 aa) fasta scores: E(): 0, 56.3% id in 325 aa.
 
   
 0.885
YPO0243
Similar to Escherichia coli hypothetical protein Smf SW:SMF_ECOLI (P30852) (374 aa) fasta scores: E(): 0, 54.0% id in 374 aa, and to Haemophilus influenzae Smf protein SW:SMF_HAEIN (P43862) (373 aa) fasta scores: E(): 0, 44.0% id in 368 aa.
  
  
 0.862
YPO0810
Similar to Aeromonas hydrophila general secretion pathway protein J ExeJ SW:GSPJ_AERHY (P31739) (207 aa) fasta scores: E(): 1.1e-14, 30.3% id in 198 aa, and to enterohemorrhagic Escherichia coli (EHEC) O157:H7 large virulence plasmid (pO157) protein EtpJ TR:O32572 (EMBL:Y09824) (199 aa) fasta scores: E(): 2.1e-16, 31.9% id in 191 aa.
  
  
 0.853
YPO0809
Similar to Erwinia carotovora general secretion pathway protein K OutK SW:GSPK_ERWCA (P31706) (328 aa) fasta scores: E(): 0.00012, 22.6% id in 327 aa, and to Klebsiella pneumoniae general secretion pathway protein K PulK SW:GSPK_KLEPN (P15750) (326 aa) fasta scores: E(): 0.0012, 25.4% id in 323 aa.
     
 0.848
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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