Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
YPO0902Putative surface protein (partial); Similar to C-terminal regions of Haemophilus influenzae adhesin Hia TR:Q48152 (EMBL:U38617) (1098 aa) fasta scores: E(): 3.6e-09, 23.0% id in 709 aa, and Xylella fastidiosa surface protein XF1981 TR:Q9PC04 (EMBL:AE004017) (1190 aa) fasta scores: E(): 0, 36.7% id in 671 aa. CDS is similar to the C-terminal regions of surface proteins and does not have an N-terminal signal sequence. Therefore it is unlikely to be exported and is a possible gene fragment. Upstream of the CDS is a region of ow GC% that is possibly laterally acquired DNA and may account f [...] (658 aa)    
Predicted Functional Partners:
YPO1387
Putative exported protein; Similar to Yersinia enterocolitica invasin precursor YadA SW:YADA_YEREN (P31489) (455 aa) fasta scores: E(): 6.6e-17, 30.7% id in 368 aa, and to Yersinia pseudotuberculosis invasin precursor YadA SW:YADA_YERPS (P10858) (434 aa) fasta scores: E(): 5.9e-11, 28.3% id in 357 aa.
  
     0.732
YPO1388
Putative exported protein; C-terminal region of the CDS is similar to Yersinia enterocolitica invasin precursor YadA SW:YADA_YEREN (P31489) (455 aa) fasta scores: E(): 3.5e-10, 26.8% id in 355 aa. Internal region of the CDS is similar to the N-terminus Yersinia pestis putative autotransporter protein YapD TR:CAC14223 (EMBL:AJ277627) (1457 aa) fasta scores: E(): 8.8e-06, 23.6% id in 559 aa.
  
     0.715
YPO2817
Putative CDP-alcohol phosphatidyltransferase; Similar to Escherichia coli CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase PgsA SW:PGSA_ECOLI (P06978) (181 aa) fasta scores: E(): 0.00091, 23.4% id in 175 aa, and to Escherichia coli hypothetical protein TR:P76090 (EMBL:AE000238) (203 aa) fasta scores: E(): 0, 55.9% id in 195 aa.
  
     0.621
YPO0901
Putative exported protein; No significant database matches. Similar to YPO1686 (61.0% identity in 354 aa overlap).
       0.606
YPO2814
Conserved hypothetical protein; N-terminal region similar to Mus musculus monoglyceride lipase MglL TR:O35678 (EMBL:AJ001118) (303 aa) fasta scores: E(): 7e-07, 26.5% id in 253 aa, and to Escherichia coli hypothetical protein YnbC SW:YNBC_ECOLI (P76092) (585 aa) fasta scores: E(): 0, 65.4% id in 581 aa.
  
     0.596
YPO0302
Similar to several membrane usher proteins including: Salmonella enteritidis SefC SW:SEFC_SALEN (P33388) (814 aa) fasta scores: E(): 7.7e-22, 25.1% id in 804 aa and to Escherichia coli YhcD SW:YHCD_ECOLI (P45420) (793 aa) fasta scores: E(): 0, 27.4% id in 795 aa.
  
     0.566
ynbD
Putative dual specificity phosphatase; Similar to Escherichia coli hypothetical protein YnbD SW:YNBD_ECOLI (P76093) (430 aa) fasta scores: E(): 0,49.6% id in 415 aa, and to Pseudomonas aeruginosa hypothetical protein PA2539 TR:AAG05927 (EMBL:AE004681) (437 aa) fasta scores: E(): 0, 44.0% id in 432 aa.
  
     0.492
YPO3987
Putative exported protein; Similar to Pseudomonas aeruginosa hypothetical protein PA4879 TR:AAG08264 (EMBL:AE004901) (689 aa) fasta scores: E(): 0, 52.2% id in 713 aa, and to Escherichia coli hypothetical protein YhjG SW:YHJG_ECOLI (P37645) (691 aa) fasta scores: E(): 0, 50.4% id in 722 aa.
  
     0.448
htrE
Similar to Escherichia coli outer membrane usher protein HtrE precursor SW:HTRE_ECOLI (P33129) (865 aa) fasta scores: E(): 0, 35.8% id in 861 aa, and to Escherichia coli outer membrane usher protein FocD precursor SW:FOCD_ECOLI (P46009) (875 aa) fasta scores: E(): 0, 35.4% id in 813 aa.
  
     0.429
YPO1920
Probable fimbrial usher protein; Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC30 (EMBL:AL031866) (863 aa) fasta scores: E(): 0, 99.9% id in 863 aa. Similar to Escherichia coli outer membrane usher protein FocD precursor SW:FOCD_ECOLI (P46009) (875 aa) fasta scores: E(): 0, 29.8% id in 857 aa.
  
     0.427
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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