STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YPO1007Putative antigenic leucine-rich repeat protein; Similar to neighbouring CDSs YPO1005 and YPO1006. Similar to Salmonella typhimurium leucine-rich repeat protein SlrP TR:Q9XCV2 (EMBL:AF127079) (765 aa) fasta scores: E(): 0, 36.9% id in 642 aa, and to Shigella flexneri 65.4 kDa antigen IpaH SW:IPA4_SHIFL (P18009) (574 aa) fasta scores: E(): 0, 40.4% id in 569 aa, and to Salmonella typhimurium secreted protein H2 TR:Q9RPH0 (EMBL:AF160727) (788 aa) fasta scores: E(): 0, 40.3% id in 608 aa. (605 aa)    
Predicted Functional Partners:
YPO1989
Putative exported protein; Similar at its C-terminal region to the following: Escherichia coli hypothetical 37.3 kDa protein in leuS-gltL intergenic region YbeQ SW:YBEQ_ECOLI (P77234) (327 aa) fasta scores: E(): 9.3e-12, 32.1% id in 196 aa, Neisseria meningitidis hypothetical protein Nmb0419 TR:Q9K0Y5 (EMBL:AE002398) (198 aa) fasta scores: E(): 1.3e-09, 28.5% id in 179 aa, and to Coxiella burnetii immunoreactive protein TR:Q9RN76 (EMBL:AF185288) (469 aa) fasta scores: E(): 4.1e-10, 24.6% id in 357 aa.
  
     0.628
YPO1006
Putative antigenic leucine-rich repeat protein; Similar to neighbouring CDSs YPO1005 and YPO1007. Similar to regions of Salmonella typhimurium secreted protein h2 TR:Q9RPH0 (EMBL:AF160727) (788 aa) fasta scores: E(): 2.5e-24, 41.9% id in 272 aa, and to regions of Yersinia pestis outer membrane protein YopM TR:O68701 (EMBL:AF053946) (409 aa) fasta scores: E(): 7e-23, 40.5% id in 259 aa.
 
   
0.454
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
Server load: medium (74%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.