STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YPO1069Similar to Escherichia coli hypothetical protein YaeB SW:YAEB_ECOLI (P28634) (235 aa) fasta scores: E(): 0,71.1% id in 235 aa, and to Vibrio cholerae hypothetical protein VC0876 TR:Q9KTM6 (EMBL:AE004172) (231 aa) fasta scores: E(): 0, 50.0% id in 232 aa. (235 aa)    
Predicted Functional Partners:
rcsF
Putative lipoprotein; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family.
       0.802
drpA
prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...]
       0.589
metQ
Putative lipoprotein; This protein is a component of a D-methionine permease, a binding protein-dependent, ATP-driven transport system.
       0.513
abc
ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
       0.475
YPO3151
Similar to Escherichia coli hypothetical protein YbaW SW:YBAW_ECOLI (P77712) (132 aa) fasta scores: E(): 0,69.5% id in 131 aa, and to Neisseria meningitidis (serogroup A) hypothetical protein NMA0492 or NMB1959 TR:Q9JR32 (EMBL:AL162753) (127 aa) fasta scores: E(): 6.4e-12, 36.5% id in 126 aa.
 
     0.446
metI
ABC transporter permease protein; Part of the binding-protein-dependent transport system for D- methionine and the toxic methionine analog alpha-methyl-methionine. Probably responsible for the translocation of the substrate across the membrane (By similarity).
       0.435
rsmJ
Conserved hypothetical protein; Specifically methylates the guanosine in position 1516 of 16S rRNA.
 
     0.421
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.