STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YPO1467Similar to Vibrio cholerae hypothetical protein VCA0114 TR:Q9KN51 (EMBL:AE004353) (444 aa) fasta scores: E(): 4.9e-31, 28.4% id in 450 aa, and to Pseudomonas aeruginosa hypothetical protein PA0079 TR:AAG03469 (EMBL:AE004447) (444 aa) fasta scores: E(): 4.1e-30, 28.7% id in 449 aa. Highly similar to YPO0976 (98.9% identity in 450 aa overlap). (450 aa)    
Predicted Functional Partners:
YPO1465
Similar to Pseudomonas aeruginosa hypothetical protein PA1657 TR:AAG05046 (EMBL:AE004593) (168 aa) fasta scores: E(): 1.3e-18, 39.2% id in 158 aa, and to Vibrio cholerae hypothetical protein VCA0107 TR:Q9KN58 (EMBL:AE004353) (168 aa) fasta scores: E(): 2.7e-18, 41.0% id in 156 aa. Highly similar to YPO0978 (97.6% identity in 166 aa overlap).
 
 
 0.958
YPO1466
Similar to Vibrio cholerae hypothetical protein VCA0108 TR:Q9KN57 (EMBL:AE004353) (492 aa) fasta scores: E(): 0, 43.9% id in 488 aa, and to Pseudomonas aeruginosa hypothetical protein PA1658 TR:AAG05047 (EMBL:AE004593) (491 aa) fasta scores: E(): 0, 44.0% id in 450 aa. CDS contains sequence divergence at the N-terminus. Highly similar to YPO0977 (98.8% identity in 516 aa overlap).
 
 
 0.956
YPO1468
Putative membrane protein; Some similarity to Vibrio cholerae hypothetical protein VCA0115 TR:Q9KN50 (EMBL:AE004353) (257 aa) fasta scores: E(): 3.2e-05, 25.2% id in 206 aa, and to Pseudomonas aeruginosa hypothetical protein PA2362 TR:AAG05750 (EMBL:AE004662) (252 aa) fasta scores: E(): 0.016, 30.1% id in 153 aa. Identical to YPO0975 (100.0% identity in 228 aa overlap).
 
  
 0.950
YPO1470
Conserved hypothetical protein; Similar to Vibrio cholerae secreted hydrophilic protein HcpA TR:P72350 (EMBL:S81006) (172 aa) fasta scores: E(): 4e-18, 37.8% id in 143 aa, and to Pseudomonas aeruginosa secreted protein Hcp TR:AAG04901 (EMBL:AE004939) (172 aa) fasta scores: E(): 1.7e-17, 35.5% id in 166 aa. CDS does not have an N-terminal signal sequence. Identical to YPO0973 (100.0% identity in 163 aa overlap).
 
 
  0.947
YPO1485
Similar to Vibrio cholerae hypothetical protein VCA0110 TR:Q9KN55 (EMBL:AE004353) (589 aa) fasta scores: E(): 0, 31.2% id in 593 aa, and to Pseudomonas aeruginosa hypothetical protein PA2369 TR:AAG05757 (EMBL:AE004663) (597 aa) fasta scores: E(): 0, 29.3% id in 610 aa.
 
 
 0.925
YPO1469
Putative exported protein; Internal region of the CDS is similar to the C-terminus of Pseudomonas fluorescens outer membrane protein OprF TR:Q9S4R5 (EMBL:AF117969) (326 aa) fasta scores: E(): 3.6e-09, 35.9% id in 181 aa, and Pseudomonas stutzeri A15 outer membrane protein OprF TR:Q9XCZ6 (EMBL:AF117972) (321 aa) fasta scores: E(): 1.8e-08, 33.7% id in 205 aa. Very similar to YPO0974 (99.5% identity in 578 aa overlap).
 
    0.917
YPO0504
Similar to Pseudomonas aeruginosa hypothetical protein PA0088 TR:AAG03478 (EMBL:AE004447) (619 aa) fasta scores: E(): 0, 29.0% id in 617 aa.
 
 
 0.916
YPO2947
Similar to Pseudomonas aeruginosa hypothetical protein PA0088 TR:AAG03478 (EMBL:AE004447) (619 aa) fasta scores: E(): 0, 41.5% id in 627 aa, and to Vibrio cholerae hypothetical protein VCA0110 TR:Q9KN55 (EMBL:AE004353) (589 aa) fasta scores: E(): 3e-14, 29.0% id in 625 aa.
 
 
 0.901
YPO0978
Similar to Vibrio cholerae hypothetical protein VCA0107 TR:Q9KN58 (EMBL:AE004353) (168 aa) fasta scores: E(): 9.8e-18, 41.0% id in 156 aa, and to Pseudomonas aeruginosa conserved hypothetical protein PA1657 TR:AAG05046 (EMBL:AE004593) (168 aa) fasta scores: E(): 1.2e-18, 39.2% id in 158 aa. Almost identical to YPO1465 (97.6% identity in 166 aa overlap).
 
 
 0.896
YPO3707
Similar to Escherichia coli hypothetical protein 498 TR:O52670 (EMBL:AF044503) (166 aa) fasta scores: E(): 0,62.0% id in 166 aa, and to Vibrio cholerae hypothetical protein VCA0107 TR:Q9KN58 (EMBL:AE004353) (168 aa) fasta scores: E(): 0, 61.3% id in 160 aa.
 
 
 0.884
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.