STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YPO1503Putative LysR-family transcriptional regulatory protein; Similar to Pseudomonas aeruginosa probable transcriptional regulator TR:AAG04802 (EMBL:AE004571) (290 aa) fasta scores: E(): 0, 53.8% id in 277 aa, and to E. coli hypothetical transcriptional regulator YneJ SW:YNEJ_ECOLI (P77309) (293 aa) fasta scores: E(): 51.6% id in 289 aa; Belongs to the LysR transcriptional regulatory family. (289 aa)    
Predicted Functional Partners:
YPO0084
Possible transcriptional regulator; Similar to several including: Sphingomonas sp LB126 protein FldY TR:Q9L3A2 (EMBL:AJ277295) (383 aa) fasta scores: E(): 3.1e-24, 32.1% id in 271 aa and to Agrobacterium radiobacter putative transcriptional regulator PcaQ TR:AAG27520 (EMBL:AF230648) (315 aa) fasta scores: E(): 2e-17, 27.0% id in 293 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.706
YPO1169
Similar to many eg. Escherichia coli xanthosine operon regulatory protein WapR SW:XAPR_ECOLI (P23841) (294 aa) fasta scores: E(): 0, 38.3% id in 287 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.677
lysR
Similar to Escherichia coli transcriptional activator protein LysR SW:LYSR_ECOLI (P03030) (311 aa) fasta scores: E(): 0, 67.9% id in 312 aa, and to Agrobacterium tumefaciens regulatory protein NocR SW:NOCR_AGRT5 (Q00678) (300 aa) fasta scores: E(): 4e-25,32.2% id in 289 aa.
  
     0.673
oxyR
Oxidative stress transcriptional regulatory protein; Similar to Erwinia carotovora hydrogen peroxide-inducible genes activator OxyR SW:OXYR_ERWCA (P71318) (302 aa) fasta scores: E(): 0, 91.2% id in 297 aa,and to Escherichia coli hydrogen peroxide-inducible genes activator OxyR SW:OXYR_ECOLI (P11721) (305 aa) fasta scores: E(): 0, 86.6% id in 305 aa; Belongs to the LysR transcriptional regulatory family.
  
    0.661
YPO0631
LysR-family regulatory protein; Similar to Pseudomonas aeruginosa possible transcriptional regulator PA4174 TR:AAG07561 (EMBL:AE004834) (307 aa) fasta scores: E(): 0, 42.3% id in 298 aa, and to Pseudomonas aeruginosa possible transcriptional regulator PA2877 TR:AAG06265 (EMBL:AE004714) (297 aa) fasta scores: E(): 0, 37.8% id in 296 aa; Belongs to the LysR transcriptional regulatory family.
  
    0.635
YPO3228
Putative LysR-family transcriptional regulatory protein; Similar to Acinetobacter sp. ADP1 LysR-type transcriptional activator BenM TR:O68014 (EMBL:AF009224) (304 aa) fasta scores: E(): 1.2e-11, 25.7% id in 272 aa,and to Ralstonia sp LysR-type transcriptional regulator ClcR TR:O69793 (EMBL:AJ006307) (294 aa) fasta scores: E(): 2.3e-10, 25.5% id in 302 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.548
YPO1504
Putative exported protein; Some similarity to Streptomyces viridifaciens valanimycin resistant protein VlmF TR:Q9LA76 (EMBL:AF148322) (402 aa) fasta scores: E(): 0.015, 26.3% id in 358 aa, and to Pseudomonas aeruginosa hypothetical protein PA1412 TR: Q9I3T2(EMBL:AE004570) (397 aa) fasta scores: E(): 0, 46.1% id in 371 aa. Contains a possible N-terminal signal sequence.
  
    0.539
gcvA
Similar to Escherichia coli glycine cleavage system transcriptional activator GcvA SW:GCVA_ECOLI (P32064) (305 aa) fasta scores: E(): 0, 88.2% id in 304 aa, and to Vibrio cholerae transcriptional regulator, LysR family VC0896 TR:Q9KTK6 (EMBL:AE004173) (306 aa) fasta scores: E(): 0,69.3% id in 296 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.502
YPO2458
Similar to Pseudomonas aeruginosa probable transcriptional regulator PA0032 TR:AAG03422 (EMBL:AE004442) (304 aa) fasta scores: E(): 4.8e-24, 34.4% id in 299 aa, and to Escherichia coli peroxide resistance protein PerR SW:PERR_ECOLI (Q57083) (297 aa) fasta scores: E(): 3.8e-20, 29.8% id in 295 aa; Belongs to the LysR transcriptional regulatory family.
  
    0.477
YPO0086
Putative exported protein; Similar in parts to Escherichia coli hypothetical 21.8 kDa protein in YiiQ SW:YIIQ_ECOLI (P32160) (199 aa) fasta scores: E(): 0, 55.9% id in 195 aa.
  
     0.469
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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