Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
YPO1920Probable fimbrial usher protein; Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC30 (EMBL:AL031866) (863 aa) fasta scores: E(): 0, 99.9% id in 863 aa. Similar to Escherichia coli outer membrane usher protein FocD precursor SW:FOCD_ECOLI (P46009) (875 aa) fasta scores: E(): 0, 29.8% id in 857 aa. (863 aa)    
Predicted Functional Partners:
YPO1918
Probable pili assembly chaperone; Previously sequenced as Yersinia pestis hypothetical protein TR:Q9Z394 (EMBL:AL031866) (246 aa) fasta scores: E(): 0, 100.0% id in 246 aa.
 
 0.976
YPO1921
Probable pili assembly chaperone; Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC31 (EMBL:AL031866) (214 aa) fasta scores: E(): 0, 100.0% id in 214 aa. Similar to Haemophilus influenzae chaperone protein HifB precursor SW:HFB2_HAEIN (P45991) (241 aa) fasta scores: E(): 3.1e-16, 30.7% id in 228 aa.
 
 0.972
YPO1707
Similar to Escherichia coli F17 fimbrial protein precursor F17A-A SW:FMF3_ECOLI (P11312) (180 aa) fasta scores: E(): 4.3e-15, 40.2% id in 174 aa, and to Xylella fastidiosa fimbrial subunit precursor Xf0083 TR:Q9PH63 (EMBL:AE003862) (184 aa) fasta scores: E(): 7.5e-17, 44.2% id in 190 aa.
 
 0.933
YPO2945
Frimbrial protein; Similar to Proteus mirabilis uroepithelial cell adherence protein Uca TR:Q51889 (EMBL:U28420) (180 aa) fasta scores: E(): 1.1e-13, 36.7% id in 177 aa, and to Escherichia coli F17A fimbrial subunit protein TR:Q9RH95 (EMBL:AF055307) (180 aa) fasta scores: E(): 1.1e-13, 38.4% id in 172 aa.
 
 0.926
YPO1922
Fimbrial protein; Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC32 (EMBL:AL031866) (176 aa) fasta scores: E(): 0, 100.0% id in 176 aa. Similar to Escherichia coli pilin precursor TR:Q57228 (EMBL:L43373) (181 aa) fasta scores: E(): 1e-11, 37.9% id in 177 aa. Similar to YPO3877 (46.5% identity in 127 aa overlap).
 
 0.914
YPO0699
Similar to Escherichia coli fimbrial chaperone protein PapD SW:PAPD_ECOLI (P15319) (239 aa) fasta scores: E(): 0, 59.1% id in 232 aa, and to Proteus mirabilis pili chaperone protein MrpD TR:Q51905 (EMBL:Z32686) (252 aa) fasta scores: E(): 0, 55.5% id in 245 aa.
 
 0.913
psaB
Chaperone protein PsaB precursor; Required for the biogenesis of the pH 6 antigen; Belongs to the periplasmic pilus chaperone family.
 
 0.913
ecpD
Similar to Escherichia coli chaperone protein precursor EcpD SW:ECPD_ECOLI (P33128) (246 aa) fasta scores: E(): 0, 41.2% id in 245 aa, and to Bordetella pertussis chaperone protein precursor FimB or FhaD SW:FIMB_BORPE (P33409) (244 aa) fasta scores: E(): 1.3e-30,43.2% id in 234 aa. This CDS is 38.3% identical to YPO1711.
 
 0.913
YPO1711
Similar to Escherichia coli chaperone protein EcpD precursor SW:ECPD_ECOLI (P33128) (246 aa) fasta scores: E(): 3.5e-25, 36.5% id in 252 aa, and to Bordetella pertussis chaperone protein FimB or FhaD precursor SW:FIMB_BORPE (P33409) (244 aa) fasta scores: E(): 1.3e-22,38.3% id in 248 aa. This CDS is 38.3% identical to YPO1708.
 
 0.913
YPO2944
Similar to Escherichia coli chaperone protein EcpD SW:ECPD_ECOLI (P33128) (246 aa) fasta scores: E(): 0, 40.2% id in 246 aa, and to Pseudomonas aeruginosa probable pili asembly chaperone PA4085 TR:AAG07472 (EMBL:AE004825) (248 aa) fasta scores: E(): 6.4e-30, 38.6% id in 220 aa.
 
 0.913
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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